Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,367,127 – 13,367,246 |
Length | 119 |
Max. P | 0.690363 |
Location | 13,367,127 – 13,367,246 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 92.72 |
Mean single sequence MFE | -33.45 |
Consensus MFE | -26.09 |
Energy contribution | -26.34 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.78 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13367127 119 - 22224390 CUGGUAUUCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGAGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA .((((((((((((((..(((((((..(((((....)))))..))))))....)..))))))))................((((.(((((.(((....)))..))))).)))))))))). ( -34.10) >DroSec_CAF1 13163 119 - 1 CUGGUAUCCAUAGCACCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA ..........((((((((((((((..(((((....)))))..))))))...((((......))))...........)))((((.(((((.(((....)))..))))).)))).))))). ( -34.00) >DroSim_CAF1 12919 118 - 1 CUGGU-UCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA (((..-..(((((((..(((((((..(((((....)))))..))))))....)..))))))).((......)).)))(.((((.(((((.(((....)))..))))).)))).)..... ( -32.70) >DroYak_CAF1 14268 112 - 1 CUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCUUACUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGC-------AAGCUUGUUUAAUAGUGCCUAGUAUGUGCUAA ..(((((.(((((((..((((((((.(((((....))))).)))))))....)..)))))))......(((.((((((..-------...)))))).))).)))))((((....)))). ( -33.00) >consensus CUGGUAUCCAUCGCAUCCGCUGGGUUGGAUAUUUAUGUCCUUCUCGGCUUUUGUUUGUGAUGACAUUAAUUUGACAGGGAUAUGAGGCAGAUUGUUUAAUAGUGCCUAGUAUGUGCUAA ..(((((.(((((((..(((((((..(((((....)))))..))))))....)..)))))))......(((.(((((..............))))).))).)))))((((....)))). (-26.09 = -26.34 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:30 2006