Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,356,825 – 13,356,919 |
Length | 94 |
Max. P | 0.662177 |
Location | 13,356,825 – 13,356,919 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -42.15 |
Consensus MFE | -26.96 |
Energy contribution | -25.94 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.41 |
Mean z-score | -1.27 |
Structure conservation index | 0.64 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13356825 94 - 22224390 --------------CGAUGGCUCAUAGCCAAAGGUGGAGAAGAAUCGCGGUGGCGGGGGCGGCAUCAUCAUGGCCCCGCCCCCAGCGCCACCACCAACGCCCAGCGAU --------------((.((((.....))))..((((((......))..((((((((((((((..((.....))..))))))))...)))))).....))))...)).. ( -42.40) >DroVir_CAF1 2719 99 - 1 AGGCCCGGUGCCGUGCCCUGCUCAUAGCCGAAUGUGGAAAAGAACCGCGGCGGCGGCGGCGGCAUGGC------AGCGCCCGCUGCGCUGCCAC---CGCCCAGCGAU .(((..(.((((((((((((((....((((..(((((.......))))).))))))))).))))))))------).))))(((((.((......---.)).))))).. ( -50.90) >DroPse_CAF1 9403 88 - 1 GGG-----------CGCCGGCUCGUAGCCGAAUGUGGAGAAGAACCGUGGUGGAGGCGGCGGCAUCAU------ACCGCCCGCAACGCUGCCACC---ACCCAGCGAG ...-----------(((((((.....))))....(((.(......)(((((((.(((((((((.....------...).))))..)))).)))))---)))))))).. ( -35.70) >DroSec_CAF1 2351 94 - 1 --------------CGAUGGCUCAUAGCCGAAGGUGGAGAAGAAGCGCGGUGGCGGGGGCGGCAUCAUCAUGGCCCCGCCCCCAGCGCCACCACCAACGCCCAGCGAU --------------...((((.....))))..(((((.(.....((((((.(((((((.((.........)).))))))).)).))))).)))))..(((...))).. ( -42.50) >DroEre_CAF1 2010 94 - 1 --------------CGAUGGCUCAUAGCCAAAGGUGGAGAAGAAGCGCGGUGGCGGGGGCGGCAUCAUCAUGGCCCCGCCCCCAGUGCCGCCACCGCCGCCCAGCGAG --------------((.((((((...(((...))).))).....((((((((((((((((((..((.....))..))))))))......))))))).)))))).)).. ( -45.70) >DroPer_CAF1 9592 88 - 1 GGG-----------CGCCGGCUCGUAGCCGAAAGUGGAGAAGAACCGUGGUGGAGGCGGCGGCAUCAU------ACCGCCCGCAACGCUGCCACC---ACCCAGCGAG ...-----------(((((((.....))))....(((.(......)(((((((.(((((((((.....------...).))))..)))).)))))---)))))))).. ( -35.70) >consensus ______________CGACGGCUCAUAGCCGAAGGUGGAGAAGAACCGCGGUGGCGGCGGCGGCAUCAU______ACCGCCCCCAGCGCCGCCACC__CGCCCAGCGAG .................((((.....))))...((((.......))))((((((((((((((.............))).))))..)))))))................ (-26.96 = -25.94 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:24 2006