Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,352,697 – 13,352,791 |
Length | 94 |
Max. P | 0.573676 |
Location | 13,352,697 – 13,352,791 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 87.73 |
Mean single sequence MFE | -35.52 |
Consensus MFE | -26.75 |
Energy contribution | -28.12 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.21 |
Mean z-score | -2.70 |
Structure conservation index | 0.75 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13352697 94 + 22224390 GUGGCAGAGAGGUGGCUACUAGCUCCUCAAACUCCAUGGAACUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGGCAAGCCCAAGUC (((((.....((((((..((((.(((...........))).))))....(((......))))))))))))))......((((....)))).... ( -33.60) >DroSec_CAF1 14380 94 + 1 GUGGCGGAGAGGUGGCUACUAGCUCCUCAACCUCCAUGGAGUUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUAAGCAAGCCCAAGUC .(((.((...((((((..((((((((...........))))))))....(((......))))))))).)).))).................... ( -33.20) >DroSim_CAF1 17595 94 + 1 GUGGCGGAGAGGUGGCUACUAGCUCCUCAACCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGGCAAGCCCAAGUC .(((.((...((((((..((((((((...........))))))))....(((......))))))))).)).)))....((((....)))).... ( -41.50) >DroEre_CAF1 13330 94 + 1 GUGGCGGAAUGGUGGCUACUAGCUCCUCCACCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGCCAAGCCCAAGUC (.(((.....((((((..((((((((...........))))))))....(((......)))))))))((((.......))))...))))..... ( -37.60) >DroYak_CAF1 19640 94 + 1 GUGGCGGAACGGUGGCCACUAGCUCCUCCGCCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGCCAAGCCCAAGUC (((((((..(((((((((((((((((...........))))))))...)))).....)))))...)))))))....((((((...)))..))). ( -38.60) >DroAna_CAF1 15430 94 + 1 GCGCCGGAACGAUGGCCAACAGCUCGUCCACUUCCAUGGAACUGGACAUAAUACUGACGCCACCGCCGCCCCCAUCGCUGGGCAAGCUCAAGUC ((...((..((.((((...(((...(((((.(((....))).)))))......)))..)))).))))((((........))))..))....... ( -28.60) >consensus GUGGCGGAAAGGUGGCUACUAGCUCCUCAACCUCCAUGGAGCUGGACAUGGUUCUAACACCGCCACCGCCACCAACACUGGGCAAGCCCAAGUC (((((((...(((((...((((((((...........))))))))...((.......))))))).)))))))....((((((....))).))). (-26.75 = -28.12 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:24 2006