Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,297,337 – 13,297,439 |
Length | 102 |
Max. P | 0.946503 |
Location | 13,297,337 – 13,297,439 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -19.06 |
Consensus MFE | -17.22 |
Energy contribution | -17.10 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.52 |
Structure conservation index | 0.90 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13297337 102 - 22224390 ----GAGCGAGAAGUGCUCAGGACACAACAUUUUCAGCGCUUAGUCACGCACAAAACUUUUUCGAAUAAUAUUAUCUGAAGAGG--GGAAAAAUAAAAUAAAAUAAAA ----..(((.((((((((.((((.......)))).))))))...)).)))......((((((((.(((....))).))))))))--...................... ( -18.40) >DroSec_CAF1 12556 104 - 1 UAGAGAGCGAGAAGUGCUCAGAA--CAACAUUUUCAGCGCUUAGUCACGCACAAAACUUUUUCGAAUAAUAUUAUCUGAAGAGG--GGAAAAAUAAAAUAAAAUAAAA ......(((.((((((((.((((--.....)))).))))))...)).)))......((((((((.(((....))).))))))))--...................... ( -19.10) >DroSim_CAF1 6469 104 - 1 UAGAGAGCGAGAAGUGCUCAGGA--CAACAUUUUCAGCGCUUAGUCACGCACAAAACUUUUUCGAAUAAUAUUAUCUGAAGAGG--GGAAAAAUAAAAUAAAAUAAAA ......(((.((((((((.((((--.....)))).))))))...)).)))......((((((((.(((....))).))))))))--...................... ( -18.70) >DroEre_CAF1 7487 100 - 1 ----AAGCGAGAAGUGCUCAGGC--CAACAUUUUCAGCGCUUAGUCACGCACAAAACUUUUUCGAAUAAUAUUAUCUGAAGAGG--GGAAAAAUAAAAUAAAAUAAAA ----..(((.((((((((.(((.--......))).))))))...)).)))......((((((((.(((....))).))))))))--...................... ( -17.20) >DroYak_CAF1 6770 106 - 1 UUCAGAGCGAGAAGUGCUCAGGA--AAACAUUUUCGGCGCUUAGUCACGCACCGAACUUUUUCGAAUAAUAUUAUCUGAAGAGGGAGGAAAACUAAAAUAAAAUAAAA ......(((.((((((((.((((--.....)))).))))))...)).))).((...((((((((.(((....))).))))))))..)).................... ( -21.90) >consensus U__AGAGCGAGAAGUGCUCAGGA__CAACAUUUUCAGCGCUUAGUCACGCACAAAACUUUUUCGAAUAAUAUUAUCUGAAGAGG__GGAAAAAUAAAAUAAAAUAAAA ......(((.((((((((.((((.......)))).))))))...)).)))......((((((((.(((....))).))))))))........................ (-17.22 = -17.10 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:51 2006