Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,282,467 – 13,282,571 |
Length | 104 |
Max. P | 0.909043 |
Location | 13,282,467 – 13,282,571 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -22.40 |
Energy contribution | -23.04 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.79 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13282467 104 - 22224390 -------UGGUCAAAGGAGGCGGAAAGCAGUUAAGCUAACCGA---------AAUCGCCAAAGGAAGUUUGGGCUUAACUGUAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUA -------.(((.(((..((((.((((((((((((((...((((---------(....((...))...))))))))))))))......))))).))))..))).))).............. ( -24.90) >DroSec_CAF1 28659 113 - 1 -------UGGUCAAAGGAGGCGGAAGGCAGUUAAGCUAACCGAAAGCGGCAAAAUCGCCAAAGGAAGUUUGGGCUUAACAACAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUU -------.(((((((((.(.(....).).((((((((...(....).(((......)))............))))))))........)))))))))........................ ( -29.00) >DroSim_CAF1 29363 113 - 1 -------UGGUCAAAGGAUGCGGAAGGCAGUUAAGCUAACCGAAAGCGGCAAAAUCGCCAAAGGAAGUUUGGGCUUAACAACAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUU -------.(((((((((.(((.....)))((((((((...(....).(((......)))............))))))))........)))))))))........................ ( -27.50) >DroEre_CAF1 28645 113 - 1 -------UGGUCAAAGGAGGCGGAAUGCCGUUAAGCUAACCAAAAGCGGGAAAAUCGCAAAAGGAAGUUUGGGCUUAACAACGAAAACUUUUGGCUUCAUUUUAUUGAAAUAAAUGGUUC -------.(((((((((.(((.....)))(((((((...(((((.((((.....)))).........))))))))))))........)))))))))((((((.........))))))... ( -29.10) >DroYak_CAF1 28333 120 - 1 GGUCGGUGGGUCAAAGGAGGCGGAAGGCAGUUAAGCUAACCGAAAGCGGGAAAAUCGCAAAAGGAAGUUUGGGCUUAGCAACAUAAACUUUUGGCUUCAUUUUAUUGAAAUAAAUGGGUC (..(.((.(((((((((.(.(....).).((((((((..((....((((.....))))....)).......))))))))........)))))))))(((......))).....)).)..) ( -31.40) >consensus _______UGGUCAAAGGAGGCGGAAGGCAGUUAAGCUAACCGAAAGCGGCAAAAUCGCCAAAGGAAGUUUGGGCUUAACAACAAAAACUUUUGGCUUAAUUUUAUUGAAAUAAAUGGUUC ........(((((((((..((.....)).((((((((..((....((((.....))))....)).......))))))))........)))))))))........................ (-22.40 = -23.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:34 2006