Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,468,342 – 1,468,435 |
Length | 93 |
Max. P | 0.913444 |
Location | 1,468,342 – 1,468,435 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 67.11 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -16.83 |
Energy contribution | -16.73 |
Covariance contribution | -0.09 |
Combinations/Pair | 1.50 |
Mean z-score | -1.72 |
Structure conservation index | 0.54 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1468342 93 - 22224390 GCCGCUGC--CCUCUGCCAGUGUG---------CGUGUGUAUUGGUGUGUGCGCGAGUGUGUGCGUCUGCCCAAUUGAAUCAGAGAAUUCGCUGUGCACCAGUG (((((((.--.......))))).)---------).....((((((((..((.((((((.(.((..((.........))..)).)..))))))))..)))))))) ( -28.40) >DroPse_CAF1 61512 93 - 1 GUCGCUGCUGCUGCUGCCACACUCUCACACACAGACACACACAGGCCUACGUGUGUGUGUGUGUGUCUGCCCAAUUGAAUCAGAGAAUA-------UAUC---- ((.((.((....)).)).))..(((((((((((.((((((((........)))))))).))))))).....(....).....))))...-------....---- ( -32.00) >DroPer_CAF1 61504 93 - 1 GUCGCUGCUGCUGCUGCCACACUCUCACACACAGACACACACAGGCCUACGUGUGCGUGUGUGUGUCUGCCCAAUUGAAUCAGAGAAUA-------UAUC---- ((.((.((....)).)).))..((((.....((((((((((((.(((.....).)).))))))))))))..(....).....))))...-------....---- ( -32.80) >consensus GUCGCUGCUGCUGCUGCCACACUCUCACACACAGACACACACAGGCCUACGUGUGAGUGUGUGUGUCUGCCCAAUUGAAUCAGAGAAUA_______UAUC____ ...((.((....)).))..............((((((((((((.((........)).))))))))))))................................... (-16.83 = -16.73 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:19 2006