Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,271,313 – 13,271,418 |
Length | 105 |
Max. P | 0.903572 |
Location | 13,271,313 – 13,271,418 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 85.59 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -17.59 |
Energy contribution | -17.40 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.76 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13271313 105 - 22224390 CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAGGGCCGAAACCAGAAAUUCAAACCACACAAAAUAACCCACCACCCAA----CUUCCCA-CUUACCA-------AACUGAAA ......((((....))))((((((((((.(((((....)))(((........)))...........................)----)))))))-.)).)).-------........ ( -21.40) >DroSec_CAF1 15784 105 - 1 CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAAGGCCGAAACCAGAAAUUCAAACCACACAAAAUACCCCACCACCCAA----CUUUCCA-CUUCCCA-------AACCGAAA ......((((....))))((..((((((.(((((....)))(((........)))............................----......)-)))))))-------..)).... ( -22.50) >DroSim_CAF1 16257 105 - 1 CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAAGGCCGAAACCAGAAAUUCAAACCACACAAAAUAACCCACCACCCAA----CUUUCCA-CUUCCCA-------AACCGAAA ......((((....))))((..((((((.(((((....)))(((........)))............................----......)-)))))))-------..)).... ( -22.50) >DroYak_CAF1 16242 113 - 1 CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGCGGCCAGGGUCGAAACCAGAAAUUCAAACCACGCAAAAUGCCCCACACUC---UCCGCAGCCCAAC-UCGCAAUCUGAAAACCGAAA ...((((.........((((..((((..(((((..(((((.(((........))).......((.....)).....))))---)))))).))))..-))))..........)))).. ( -26.71) >consensus CAAUUGGCCAAUUAUGGCGGAAUGGGAAUGUGGCCAAGGCCGAAACCAGAAAUUCAAACCACACAAAAUAACCCACCACCCAA____CUUCCCA_CUUCCCA_______AACCGAAA ...((.((((....)))).)).((((.....(((....)))(((........)))................)))).......................................... (-17.59 = -17.40 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:23 2006