Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,249,659 – 13,249,775 |
Length | 116 |
Max. P | 0.642347 |
Location | 13,249,659 – 13,249,775 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -24.67 |
Energy contribution | -24.57 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.13 |
Mean z-score | -2.15 |
Structure conservation index | 0.85 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13249659 116 + 22224390 AAGGAGAAGGCAAUGGAAAAUCCGGCCAGGUCUUCGCCAGCAAUUGUGGAUAAAAAAGUACGCGCAGGUGAAAUGGAAAAGAAGGUCGUAAAAUCCACGAAAGGGACUGUUCCAGA ..((((..(((...((.....)).))).(..((((.(((.((.(((((..((......))..))))).))...)))....))))..)......(((.(....))))...))))... ( -31.80) >DroSec_CAF1 6101 116 + 1 AAGGAGAAGGUAAUGGAAAAACCGGCCAGGUCCUCGCCAGCAAUUGCGGAUAAAAAAGUACGUGCAGGUGAAAUAGAUAAGAAAGUCGUAAAAUCCACAAAAGGGACUGUUCCAGA ..((((..(((...((.....)).))).((((((((((.(((..(((..........)))..))).)))))....(((......)))................))))).))))... ( -27.60) >DroSim_CAF1 6121 116 + 1 AAGGAGAAGGUAAUGGAAAAACCGGCCAGGUCCUCGCCAGCAAUUGUGGAUAAAAAAGUACGUGCAGGUGAAAUAGACAAGAAGGUCGUAAAAUCCACAAAAGGGACUGUUCCAGA ..((((..(((...((.....)).))).((((((.(....)..((((((((.......(((......))).....(((......))).....))))))))..)))))).))))... ( -28.00) >consensus AAGGAGAAGGUAAUGGAAAAACCGGCCAGGUCCUCGCCAGCAAUUGUGGAUAAAAAAGUACGUGCAGGUGAAAUAGAAAAGAAGGUCGUAAAAUCCACAAAAGGGACUGUUCCAGA ..((((..(((...((.....)).))).((((((.(....)..((((((((.......(((......))).....(((......))).....))))))))..)))))).))))... (-24.67 = -24.57 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:05 2006