Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,204,100 – 13,204,198 |
Length | 98 |
Max. P | 0.633825 |
Location | 13,204,100 – 13,204,198 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -36.97 |
Consensus MFE | -24.02 |
Energy contribution | -26.13 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.22 |
Mean z-score | -1.57 |
Structure conservation index | 0.65 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13204100 98 - 22224390 AGUGGUGACUGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGAUGA---A (((((((((..(....)..)))))))))....((((.((((..((((....))))..)))).))))(((((((.(............).))))))).---. ( -39.00) >DroSec_CAF1 32582 95 - 1 ---GGUGACCGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAACGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA---A ---(((((((((....)))))))))((..(.......((((..((((....))))..))))((((((((............)))))))).)..))..---. ( -37.60) >DroSim_CAF1 33201 95 - 1 ---GGUGACUGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA---A ---(....)..((((.(..(((((((((.(((((((.((((..((((....))))..)))).)))).))).)))))....)).))..).))))....---. ( -35.40) >DroEre_CAF1 41777 95 - 1 ---GGUGACCGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA---A ---(((((((((....)))))))))((..(.......((((..((((....))))..))))((((((((............)))))))).)..))..---. ( -37.90) >DroYak_CAF1 41070 98 - 1 ---GGUGACCGCGGGCGUGGUCAUUGCUGGAUUUGUGGGCGGUAUCGUUAGCGGUAUCGUCGGCGGCAACGAUGGGUAAAUGUGCUGCUCCUGGUGAAGAA ---(((((((((....)))))))))((..(.......((((((((((....))))))))))(((((((...((......)).))))))).)..))...... ( -39.00) >DroAna_CAF1 54956 86 - 1 ---GAUGCUGGAGGGCGUGGCCGU----GAAACUGUUCACGGG--------CGGCUGGAGCGGCGGCAUUGAUGGAUACAUGGGCUGAUCCUGGCGCAUCA ---(((((.....(((.((.((((----(((....))))))).--------)))))(((....((((....(((....)))..)))).)))....))))). ( -32.90) >consensus ___GGUGACCGCGGGCGUGGUCAUCGCUGGAUUUGUGGGCGGGAUCGUUAGCGGUAUCGUCGGCGGCAUCGGGUGAUAAAUGUGCUGCUCCUGGUGA___A ...........((((.((((((((((((.(((((((.(((((.((((....)))).))))).)))).))).)))))....)).))))).))))........ (-24.02 = -26.13 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:51 2006