Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,166,797 – 13,166,893 |
Length | 96 |
Max. P | 0.795610 |
Location | 13,166,797 – 13,166,893 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -17.97 |
Energy contribution | -17.97 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.12 |
Mean z-score | -2.28 |
Structure conservation index | 0.55 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13166797 96 - 22224390 CGUUGGCA-ACGGGCGCAAUUAGCAGACUGAUAAUGAUAAUGGCGCGAGCCCAAUGUGGUCGCUAUGAGCCAUCCAAGUCGGUUAUGCCCGGCCGAU .((((((.-.(((((((.....)).(((((((.........(((....))).....(((..((.....))...))).)))))))..))))))))))) ( -36.20) >DroEre_CAF1 1735 97 - 1 AGUGGGCAAACAGGCGCAAUUAGCAGACUGAUAAUGAUAAUGGCGCGCACCCAAUGUGGCCACUAUGAGCCCAUCAAGUCGGCUAUGCCCCGACGAU .((((((...(((..((.....))...)))....(.(((.((((.((((.....)))))))).))).)))))))...(((((.......)))))... ( -32.10) >DroYak_CAF1 1715 77 - 1 ------------GGCGCAAUUAGCAGACUGAUAAUGAUAAUGGC-------CACUAUGGCCGCUAUGAGC-CAUCAAGUCGGCUAUGCCCCGCCGAU ------------((((....((((.(((((((..(.(((.((((-------(.....))))).))).)..-.))).)))).)))).....))))... ( -28.90) >consensus _GU_GGCA_AC_GGCGCAAUUAGCAGACUGAUAAUGAUAAUGGCGCG__CCCAAUGUGGCCGCUAUGAGCCCAUCAAGUCGGCUAUGCCCCGCCGAU ............((.(((..((((.(((((((..(.(((.((((..............)))).))).)....))).)))).)))))))))....... (-17.97 = -17.97 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:33 2006