Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,160,457 – 13,160,547 |
Length | 90 |
Max. P | 0.755053 |
Location | 13,160,457 – 13,160,547 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.20 |
Mean single sequence MFE | -38.44 |
Consensus MFE | -23.51 |
Energy contribution | -24.60 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.10 |
Mean z-score | -2.49 |
Structure conservation index | 0.61 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13160457 90 + 22224390 GUGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGCUUGAAUUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU ((((((.(((((((------------((.((((..(((....)))..))))))))))))).(((((....)))))....)).(((....)))))))...... ( -37.50) >DroSec_CAF1 21975 90 + 1 GCGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGCCUGAACUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU (((((..(((((((------------((.......(((....)))......))))))))).(((((....))))).))))).(((....))).......... ( -37.92) >DroSim_CAF1 16875 90 + 1 GCGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGCCUGAACUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU (((((..(((((((------------((.......(((....)))......))))))))).(((((....))))).))))).(((....))).......... ( -37.92) >DroEre_CAF1 22604 90 + 1 GUGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGUUUAAACUUGGGCCGAAAGCUGUCGCAGCAGCAUUCGCUGCCCCUCGGCUCACCCACCU (((((((((..(.(------------(((....)))).)..)))........((((((((.(((((....))))).))))..))))....))))))...... ( -37.90) >DroYak_CAF1 21886 90 + 1 GUGAGCAUGUGGCC------------CACAAUUGUGGGCUGCGCUUAAAUCUGGGACGCAAGCUAUCGCAGCAGCAUUCGCUGCCACUGGGCUCACCCAGCA ((((((..((((((------------(((....))))))((((((((....)))).)))).((....)).(((((....))))))))...))))))...... ( -40.10) >DroAna_CAF1 24925 102 + 1 GGGAUCAUGUGUCCGGCACUCAUAUCCAGAACGGCGGCCUCCGGCUGAGUCUGGGCCGGAAACUGUCCCAUCAGUACUCCGUGCCACUUGGCUCGCCCACCU ((((.((.((.((((((........(((((....(((((...)))))..))))))))))).))))))))..........((.(((....))).))....... ( -39.30) >consensus GUGAGCAUGUGGCC____________CACAAUUGUGGCCUGCGCCUGAACUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU ..((((..(.(((..................(((((((((............)))))))))((((......)))).......))).)...))))........ (-23.51 = -24.60 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006