Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,434,404 – 1,434,508 |
Length | 104 |
Max. P | 0.920733 |
Location | 1,434,404 – 1,434,508 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.57 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -35.39 |
Energy contribution | -35.83 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.68 |
Structure conservation index | 0.89 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1434404 104 + 22224390 CACUUGUACGCCUUCAUACCCACACCCUUGCAAUGGCCAUCGCGUGAGUAUGUGUGUGAGUGCAUAGGUGUGU--GUGUGCGGCUGACUAUUCAGUUUGUGCGCUA .....(((((((..(((((.((((((..((((.(.(((((.((....))..))).)).).))))..)))))).--))))).))).((((....)))).)))).... ( -38.10) >DroSec_CAF1 39158 104 + 1 CACUUGUACGCCUUCAUACCCACACCCUUGCAGUGGCCAUCGCAUGAGU--GUGUGUGAGUGCAUAGGUGUGUGUGUGUGCGACUGACUAUUCAGUUUGUGCGCUA .....((((((...(((((.((((((..((((.(.((((.(((....))--))).)).).))))..)))))).))))).))((((((....)))))).)))).... ( -40.50) >DroSim_CAF1 30914 104 + 1 CACUUGUACGCCUUCAUACCCACACCCUUGCAGUGGCCAUCGCAUGAGU--GUGUGUGAGUGCAUAGGUGUGUGUGUGUGCGACUGACUAUUCAGUUUGUGCGCUA .....((((((...(((((.((((((..((((.(.((((.(((....))--))).)).).))))..)))))).))))).))((((((....)))))).)))).... ( -40.50) >consensus CACUUGUACGCCUUCAUACCCACACCCUUGCAGUGGCCAUCGCAUGAGU__GUGUGUGAGUGCAUAGGUGUGUGUGUGUGCGACUGACUAUUCAGUUUGUGCGCUA .....((((((...(((((.((((((..((((.(.((...(((........))).)).).))))..)))))).))))).))((((((....)))))).)))).... (-35.39 = -35.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:11 2006