Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,130,575 – 13,130,667 |
Length | 92 |
Max. P | 0.903054 |
Location | 13,130,575 – 13,130,667 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 85.30 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -20.46 |
Energy contribution | -20.52 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.85 |
Structure conservation index | 0.75 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13130575 92 + 22224390 UUGGGCACAGUGUGACCUCGCUGCG--AAUGCCCGUAAAGGCAAUUCUUUCGACGCCCUGGUCACUCUGCCAUUCACUGGAAAUAUUUACAAGU (((((((..(.((((((..((..((--((((((......)))).....))))..))...)))))).))))).(((....))).......))).. ( -26.30) >DroSim_CAF1 1822 92 + 1 UUGGGCACAGUGUGACCUCGCUGCG--AAUGCCAGUAAAGGCAAUUCUUCCAGCGCACUGGUCACUCUGCCAUUCACUGGAAAUAUUUAAAAGU ...((((..(.((((((.(((((.(--((((((......))))....))))))))....)))))).)))))....................... ( -30.20) >DroEre_CAF1 21158 92 + 1 UUGGGCACAGUGUGACCCCGCUGCG--AAUGCCAAUAAAGGCAAUUAUUUUAGCACUCUGGUCACUCUGUAAGUCAAUGGAAAUAUUCUUAAGU ...(((((((.((((((..((((.(--(.((((......))))....)).)))).....)))))).))))..)))................... ( -23.90) >DroYak_CAF1 8652 94 + 1 UUGGGCUUAGUGUGACCUCGUUGCGAGAAUGCCAAUAAAGGCAGUUCUUUUGCCGCUCUGGUCACUCUGCAAGUCACUGGAAAUAUUUCAAAGU ...(((((((.((((((..((.((((((.((((......))))....)))))).))...)))))).)))..))))................... ( -28.70) >consensus UUGGGCACAGUGUGACCUCGCUGCG__AAUGCCAAUAAAGGCAAUUCUUUCAGCGCUCUGGUCACUCUGCAAGUCACUGGAAAUAUUUAAAAGU .......(((.((((((.(((((......((((......)))).......)))))....)))))).)))......................... (-20.46 = -20.52 + 0.06)
Location | 13,130,575 – 13,130,667 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 85.30 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -21.63 |
Energy contribution | -22.95 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.16 |
Mean z-score | -2.08 |
Structure conservation index | 0.78 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13130575 92 - 22224390 ACUUGUAAAUAUUUCCAGUGAAUGGCAGAGUGACCAGGGCGUCGAAAGAAUUGCCUUUACGGGCAUU--CGCAGCGAGGUCACACUGUGCCCAA .......................((((.((((.....(((.(((...((((.((((....)))))))--)....))).))).)))).))))... ( -28.80) >DroSim_CAF1 1822 92 - 1 ACUUUUAAAUAUUUCCAGUGAAUGGCAGAGUGACCAGUGCGCUGGAAGAAUUGCCUUUACUGGCAUU--CGCAGCGAGGUCACACUGUGCCCAA ........................((((.((((((....(((((...((((.(((......))))))--).))))).)))))).))))...... ( -31.30) >DroEre_CAF1 21158 92 - 1 ACUUAAGAAUAUUUCCAUUGACUUACAGAGUGACCAGAGUGCUAAAAUAAUUGCCUUUAUUGGCAUU--CGCAGCGGGGUCACACUGUGCCCAA .......................(((((.((((((.((((((((..((((......)))))))))))--).......)))))).)))))..... ( -24.50) >DroYak_CAF1 8652 94 - 1 ACUUUGAAAUAUUUCCAGUGACUUGCAGAGUGACCAGAGCGGCAAAAGAACUGCCUUUAUUGGCAUUCUCGCAACGAGGUCACACUAAGCCCAA .................(((((((((((((((.((((((.((((.......)))).)).)))))))))).)))....))))))........... ( -26.70) >consensus ACUUUUAAAUAUUUCCAGUGAAUGGCAGAGUGACCAGAGCGCCAAAAGAAUUGCCUUUACUGGCAUU__CGCAGCGAGGUCACACUGUGCCCAA ........................((((.((((((....(((((.......((((......))))......))))).)))))).))))...... (-21.63 = -22.95 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:18 2006