Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,083,468 – 13,083,567 |
Length | 99 |
Max. P | 0.946227 |
Location | 13,083,468 – 13,083,567 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 87.80 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -29.85 |
Energy contribution | -30.22 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.14 |
Mean z-score | -2.41 |
Structure conservation index | 0.78 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13083468 99 + 22224390 AAGUUGAAGUUGGAGCUGAAG----------UUGUUGCCCCAAGGCGGCGCAAAAGUCUGGGCCUAUUAGUCUGGGUGUUGCGCUCUAAAGUUGCAGCUGGGUUUUACA .(((((...(((((((.....----------..((((((....))))))((((...((..(((......)))..))..))))))))))).....))))).......... ( -34.10) >DroSec_CAF1 32582 99 + 1 AAGUUGAAGUUGGCGCUGGAG----------UUGUUGCCCCAAGGCGGCGCAAAAGUCUGGGCCUAUUAGUUUGGGUGUUGCGCUCUAAAGUUGCAGCUGGGUUUUGCG ..((.(((.(..(((((((((----------(.((((((....))))))((((...((..(((......)))..))..)))))))))).....)).))..).))).)). ( -32.70) >DroEre_CAF1 33321 98 + 1 AAGUUGAAGUUGCAGUUGGAG----------CUGUUGCCCCAAGGCGGCGCAACAGUCUGGGCCUAUUAGUCUGGGUGUUGCGCUCCAAAGUUGCAGCUGGGCUU-ACA (((((..(((((((.((((((----------(.((((((....))))))((((((.((..(((......)))..)))))))))))))))...))))))).)))))-... ( -48.60) >DroYak_CAF1 35671 105 + 1 AAGUUGAAGUUGUAGCUGGAGUCGCUUGUUGUUGUUGCCCCAAGGCGGCGCAAAAGUCUGGGCCUAUUAGUCUGGGUGUUGCGCUCUAAAGUUGCAGCUGGGUUU---- .......((((((((((((((.(((...((((.((((((....))))))))))...((..(((......)))..))....)))))))..))))))))))......---- ( -37.00) >consensus AAGUUGAAGUUGGAGCUGGAG__________UUGUUGCCCCAAGGCGGCGCAAAAGUCUGGGCCUAUUAGUCUGGGUGUUGCGCUCUAAAGUUGCAGCUGGGUUU_ACA .......((((((((((((((............((((((....))))))((((...((..(((......)))..))..)))).))))..)))))))))).......... (-29.85 = -30.22 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:57 2006