Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,044,816 – 13,044,933 |
Length | 117 |
Max. P | 0.802559 |
Location | 13,044,816 – 13,044,933 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -30.16 |
Consensus MFE | -18.84 |
Energy contribution | -20.28 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.44 |
Structure conservation index | 0.62 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13044816 117 - 22224390 CACAUGCAUAAAACAAAAACAAAGCGGCUGCAGAAGCUGAUGAAGGAGAAUAAUAAUGAGAAGAAGGAG---CAGUAGCCAACUCAUUCAAUAAUUGUUGUUUCUCCUUUUCUUGCGCCU .....(((................(((((.....)))))..((((((((((((((((..(((..((..(---(....))...))..)))....))))))).)))))))))...))).... ( -27.90) >DroSec_CAF1 14255 113 - 1 CACAUGCAUUAAACAAAAACAAAGCGGCUGCAGAAGCGGAC-------UUCUCUAAUGAGAAGAAGGAGCAGCAGUAGACAACUCAUUCAAUAAUUGCUGUUUUCCCUUUUCUUGCGCCU .........................(((.(((((((.((.(-------(((((....))))))..(((((((((((.................))))))))))).)).)))).)))))). ( -31.33) >DroSim_CAF1 13776 113 - 1 CACAUGCAUUAAACAAAAACAAAGCGGCUGCAGAAGCGGAC-------UUCUCUAAUGAGAAGAAGGAGCAGCAGUAGACAACUCAUUCAAUAAUUGCCGUUUCCCCUUUUCUUGCGCCU .........................(((.(((((((.((.(-------(((((....))))))..(((((.(((((.................))))).))))).)).)))).)))))). ( -28.83) >DroYak_CAF1 15272 120 - 1 CACAUGCAUAAAAUAAAAACAAAGCGCCUGCAGAAGCGGAAGAAGGAGAAUAAUAAUGAGAAGAAGCAGCAGCAGUAGGCAACUCAUUCAAUAAUUGUUGUUUUUCUUUUUCUUGCGCUU .....................((((((..((....))((((((((((((((((((((.....(((((....)).(.((....))).)))....)))))))))))))))))))).)))))) ( -32.60) >consensus CACAUGCAUAAAACAAAAACAAAGCGGCUGCAGAAGCGGAC_______AACAAUAAUGAGAAGAAGGAGCAGCAGUAGACAACUCAUUCAAUAAUUGCUGUUUCCCCUUUUCUUGCGCCU .......................(((.((((....))))..................((((((.((((((((((((.................)))))))))))).))))))...))).. (-18.84 = -20.28 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:40 2006