Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,993,958 – 12,994,049 |
Length | 91 |
Max. P | 0.808709 |
Location | 12,993,958 – 12,994,049 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -33.55 |
Consensus MFE | -27.11 |
Energy contribution | -28.62 |
Covariance contribution | 1.51 |
Combinations/Pair | 1.29 |
Mean z-score | -1.64 |
Structure conservation index | 0.81 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12993958 91 - 22224390 AGCAAUUCCAGGGUCACGUCCACGGCCUGAUCCUUGGGAACAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUUGGUCCGUGGUCA .....(((((((((((.((.....)).)))))).))))).((((((.....(((.((....)).)))..(((......))))))))).... ( -28.00) >DroGri_CAF1 134 82 - 1 AUCAAAUCGAUGGAUAUAUUCACCAUCGGCUCCUUCG------CUGCAUCCCCGACGG---CGGCGCAUUCGUAGAGUGCCGGCGAGCGCA .......((((((.........))))))((((((..(------((((..........)---))))((((((...)))))).)).))))... ( -26.40) >DroSec_CAF1 140 91 - 1 AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAGCAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUCCCGCCGUGGUCA .....(((((((((((.((.....)).)))))))..)))).....((..((((((((((((((...........)))))))))))))))). ( -42.60) >DroSim_CAF1 134 91 - 1 AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAGCAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUUCCGCCGUGGUCA .....(((((((((((.((.....)).)))))))..)))).....((..((((((((((((((...........)))))))))))))))). ( -39.70) >DroEre_CAF1 134 91 - 1 AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAACAUGGGAAUCCACCGCGGAAUUGGCGCAGUCAUACAAUUCCGCAGUGGUCA .....(((.(((((((.((.....)).))))))).))).......((..((((.(((((((((...........))))))))).)))))). ( -33.20) >DroYak_CAF1 134 91 - 1 AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAACAUGCGAAUCCGCCGCGGAAUUGGCGCAGUCAUACAACUCCGCCGUGGUCA .(((..((((((((((.((.....)).)))))))..)))...)))((..((((.(((((.(((...........))).))))).)))))). ( -31.40) >consensus AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAACAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUUCCGCCGUGGUCA ......((((((((((.((.....)).))).))))))).......((..((((((((((((((...........)))))))))))))))). (-27.11 = -28.62 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:29 2006