Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,993,240 – 12,993,347 |
Length | 107 |
Max. P | 0.651449 |
Location | 12,993,240 – 12,993,347 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 73.11 |
Mean single sequence MFE | -37.66 |
Consensus MFE | -26.51 |
Energy contribution | -27.02 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.24 |
Mean z-score | -0.92 |
Structure conservation index | 0.70 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12993240 107 + 22224390 CGGGCGCCGGUGGUGGUGGCUGAUAACGCGACUGCACCGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUCUUUGCUACGAAGUCCUCCCUUUUUUCCAGCCGUAAA------ .((((((((((.(..((.((.......)).))..)))))))))))(((..((...((((.(..(.(((.((........)).))))..)))))...)).))).....------ ( -40.40) >DroVir_CAF1 4533 99 + 1 CAGGCGAUUGGGGUGGUGGCUGGUAGCGCGACUGCACUGGCGCUUGGCCAGGCGCAAAGCGUUGCGACAUUUUUAAUUC-------UGCUU----U---GCGUUAAAUAACUU ((((((.(..(.(..((.((.......)).))..).)..)))))))....(((((((((((..................-------)))))----)---)))))......... ( -33.47) >DroPse_CAF1 9006 91 + 1 CGGGUGACGGCGGCGGCGGUUGGUAGCGCGACUGCACUGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUUUUCGCUUG------CUAACU----------UGAGAA------ (((((...((((((((..(((.(((((((...(((((((((.....)))).)))))..))))))).).))..)))).))------)).)))----------))....------ ( -39.00) >DroGri_CAF1 1769 84 + 1 CAGGCGCUUGUGGCGGUGGCUGGUAGCGCGACUGCACCGGCGCUUGGCCAGGCGCAAAGCGUUGCGACAUCUUCACUUC-------UGUUU---------------------- .(((((...((((.((((....(((((((...(((.(((((.....))).)).)))..)))))))..)))).))))...-------)))))---------------------- ( -31.60) >DroEre_CAF1 1602 107 + 1 CGGGCGCCGGUGGUGGUGGCUGAUAGCGCGACUGCACCGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUCUUUGCUAGAAGCUCCUCCCUUUUUUCCGGCCGUAAA------ ...(((((((.((..(..(((..((((((((((((((((((.....))).))))))....)))))(....)...))))..)))..)..))......)))).)))...------ ( -44.80) >DroPer_CAF1 3868 91 + 1 CGGGUGACGGCGGCGGCGGUUGGUAGCGCGACUGCACUGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUUUUCGCUUG------CUAAGU----------UGAGAA------ ..(....)((((((((..(((.(((((((...(((((((((.....)))).)))))..))))))).).))..)))).))------))....----------......------ ( -36.70) >consensus CGGGCGACGGUGGCGGUGGCUGGUAGCGCGACUGCACCGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUCUUCGCUUC______CUACCU__________CGUAAA______ ........(((((.((((....(((((((...(((((((((.....))).))))))..)))))))..)))).))))).................................... (-26.51 = -27.02 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:27 2006