Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,980,219 – 12,980,331 |
Length | 112 |
Max. P | 0.596664 |
Location | 12,980,219 – 12,980,331 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -21.47 |
Energy contribution | -22.34 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.72 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12980219 112 + 22224390 CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAACCUCAGGUGGCAAGUAGGAAGUAAAUCGCUCCAUCUUAUUCAUCAUUUGGCCAACUAUCUGAGCCACUCGAGGUAUC .............((((((.....))))))....(((((..(((((.((((((((((.....)))...)))))))..(((..(((....)))..))))))))..)))))... ( -32.10) >DroSec_CAF1 11032 110 + 1 CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAGCCUCAGGUGGCAAGUAGGAAGUA-AUCGCUCCAUCUUAUUCGUCAUUUAGCCAACUAUCUGAGCCACUCGAG-GAUC .........(((.((((((.....)))).)).)))((((..(((((.((((((((((.-...)))...)))))))..(((..(((....)))..))))))))..)))-)... ( -31.60) >DroSim_CAF1 2083 111 + 1 CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAGCCUCAGGUGGCAAGUAGGAAGUA-AUCGCUCCAUCUUAUUCGUCAUUUGGCCAACUAUCUGAGCCACUCGAGGGAUC (((.(((((((((((((((.....))))))....(((......)))..))))))(((.-...)))...........)))...((((((......)).))))...)))..... ( -32.20) >DroEre_CAF1 7106 103 + 1 CUCACACUCAUACGCCACGUAAUACGUAUCCAUAACCUCAGGUGGCAAGUAGGAAGUA-AGCGCCUCAUCUUAU-------UUGGCCAACUAUCUGGCCCACUCGAG-UAUC .....((((....((((((.....))).......(((...))))))((((((((.(..-.......).))))))-------))(((((......))))).....)))-)... ( -23.50) >consensus CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAACCUCAGGUGGCAAGUAGGAAGUA_AUCGCUCCAUCUUAUUCGUCAUUUGGCCAACUAUCUGAGCCACUCGAG_GAUC .............((((((.....)))))).....((((..(((((...((((.(((.....(((..................)))..))).)))).)))))..)))).... (-21.47 = -22.34 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:22 2006