Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,970,501 – 12,970,611 |
Length | 110 |
Max. P | 0.524682 |
Location | 12,970,501 – 12,970,611 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -17.79 |
Energy contribution | -19.30 |
Covariance contribution | 1.51 |
Combinations/Pair | 1.11 |
Mean z-score | -2.39 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12970501 110 + 22224390 AUUGACAAAGCAAUUGGAUCAUAAAUAAUUUAUUAAUUAAGAUGUUUCCGAUAGAAAUCGCUUAACACUGAACAUGACCCAAUUCCAAUGUUUCGCAGGGGAAACUCAAC ...((((..(.((((((.((((...(((((....)))))((.((((..((((....))))...))))))....)))).)))))).)..)))).....(((....)))... ( -21.00) >DroSim_CAF1 4835 110 + 1 AUUGACAAAGGAAUUGGAUCAUAAAUAAUUUAUUAAUUAAGAUGUUUCCGAUGGAAAUCGCUAAACACUGAACAUGACCCAAUUCCAAUGAUUCGCAGGGGAAACUCAAC .........((((((((.((((...(((((....)))))((.(((((.((((....))))..)))))))....)))).))))))))...........(((....)))... ( -28.90) >DroYak_CAF1 5054 110 + 1 AUUGACAAAGGAAUGGGAUCAUAAAUUAUUUAUUAAUUAAGAUGCUUUCGAUAGAAAUCGCUAGACACUCAACAUGACCCAAUUUCAAUGUUUCACAGCGGAAGCUCAGC ...((((..((((((((.((((.(((((.....)))))..((((((..((((....))))..)).)).))...))))))).)))))..))))....(((....))).... ( -23.30) >consensus AUUGACAAAGGAAUUGGAUCAUAAAUAAUUUAUUAAUUAAGAUGUUUCCGAUAGAAAUCGCUAAACACUGAACAUGACCCAAUUCCAAUGUUUCGCAGGGGAAACUCAAC .((((....((((((((.((((...(((((....)))))((.((((..((((....))))...))))))....)))).))))))))...(((((......))))))))). (-17.79 = -19.30 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:14 2006