Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,917,396 – 12,917,498 |
Length | 102 |
Max. P | 0.561244 |
Location | 12,917,396 – 12,917,498 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.22 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -19.48 |
Energy contribution | -18.92 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.21 |
Mean z-score | -1.41 |
Structure conservation index | 0.80 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12917396 102 + 22224390 AAGCGACAGGUGGGAAACACAGGUAAAUGCCAAAGGGAGCGAAAGCGAAAGAUGGCCG-------CGCAGAAUUAAAGAAUCUUUGCUCAUGAUGGCUUUCCAAAAUAA ..(((((..(((.....)))..))....((((......((....))......))))))-------)((((((((....))).)))))......(((....)))...... ( -23.30) >DroSec_CAF1 3031 102 + 1 AAGCGACAGGUGGGAAACACAGGUAAAUUCCAAAGGGAGCGAAAGCGAAAGAUGGUCG-------CGCAGAAUUAAAGAAUCUUUGCUUAUGAUGGCUUUCCAAAAUAA ..(((((..(((.....)))........(((....)))((....))........))))-------)((((((((....))).))))).(((..(((....)))..))). ( -23.20) >DroSim_CAF1 3041 102 + 1 AAGCGACAGGUGGGAAACACAGGUAAAUUCCAAAGGGAGCGAAAGCGAAAGAUGGCCG-------CGCAGAAUUAAAGAAUCUUUGCUUAUGAUGGCUUUCCAAAAUAA ..((.....(((.....))).(((....(((....)))((....))........))))-------)((((((((....))).))))).(((..(((....)))..))). ( -20.60) >DroEre_CAF1 3000 102 + 1 AAGCGACAGGUGGGAAACACAGGUAAAUGCCAAAGGGAGCGAAAGCGAAAGAUGGCCG-------CGCAGAAUUAUAGAAUGUCUGCUUAUGAUGUCUUCCUAGGAUAA ..(((((..(((.....)))..))....((((......((....))......))))))-------)((((((((....))).)))))......(((((.....))))). ( -27.50) >DroYak_CAF1 3057 109 + 1 AAGCGACAGGUGGAAAACACAGGUAAAUGCCAAAGGGAGCGAAAGCGAAAGAUGGCCGCAGAUGGCGCAGAAUUAAAGGAUCUCUGCUUAUGAUGUCUUCCUAAGAUAA ..(((((..(((.....)))..))....((((......((....))......))))))).......((((((((....))).)))))......(((((.....))))). ( -27.60) >consensus AAGCGACAGGUGGGAAACACAGGUAAAUGCCAAAGGGAGCGAAAGCGAAAGAUGGCCG_______CGCAGAAUUAAAGAAUCUUUGCUUAUGAUGGCUUUCCAAAAUAA .....((..(((.....)))..))..........((((((....)).......(((((........((((((((....))).)))))......)))))))))....... (-19.48 = -18.92 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:40 2006