Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,879,679 – 12,879,769 |
Length | 90 |
Max. P | 0.532225 |
Location | 12,879,679 – 12,879,769 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -27.97 |
Consensus MFE | -23.30 |
Energy contribution | -23.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.90 |
Structure conservation index | 0.83 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12879679 90 - 22224390 AUUGUCAUUGUC---GUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCUUGUUGGGCAACCGG--CAAAUGUGGGUCGCAUUUCAUU ............---((((....))))........(((((((((((..........(((((((....))))--)))...)))))))))))..... ( -27.02) >DroSec_CAF1 82458 92 - 1 AUUGUCAUUGUC---GUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCAUGUGGGGCAACCGGCGCAAAUGUGGGUCGCAUUUCAUU ............---((((....))))........(((((((((((...((.((((..((.((....)).)))))).)))))))))))))..... ( -29.50) >DroYak_CAF1 89627 93 - 1 GUUGUCGUUGUCGUUGUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCUUCUUGGGCAACCAG--CGAAUGUGGGUCGCAUUUCAUU ((((....((.((....)).)).))))........(((((((((((...((.(((((....((....))))--))).)))))))))))))..... ( -27.40) >consensus AUUGUCAUUGUC___GUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCUUGUUGGGCAACCGG__CAAAUGUGGGUCGCAUUUCAUU ...............((((....))))........(((((((((((...((.(((....((((....))))..))).)))))))))))))..... (-23.30 = -23.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:31 2006