Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,862,332 – 12,862,428 |
Length | 96 |
Max. P | 0.990636 |
Location | 12,862,332 – 12,862,428 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -22.22 |
Consensus MFE | -19.90 |
Energy contribution | -19.62 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.47 |
Structure conservation index | 0.90 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12862332 96 + 22224390 AUGUGGAACCUUGGCAUAACUUUUAAUUAGCCCGCAGUGUUGAGUAACUUUUUAAGGAGUUUUUCACCUGCGAAAGUUUAUUAAGU-UUGCAGAAAA .((..((..(((((...((((((.........(((((.((.(((.((((((....)))))).))))))))))))))))..))))))-)..))..... ( -21.10) >DroSec_CAF1 60505 96 + 1 AUGUGCAACCUUGGCAUAACUUUUAAUUAGCCCGCAGUGUUGAGUAACUUUUUAAGGAGUUUUUCACCUGCGAAAGUUUAUUAAGU-UUGCAGAAAA .(.(((((.(((((...((((((.........(((((.((.(((.((((((....)))))).))))))))))))))))..))))).-))))).)... ( -24.90) >DroSim_CAF1 63726 96 + 1 AUGUGCAACCUUGGCAUAACUUUUAAUUAGCCCGCAGUGUUGAGUAACUUUUUAAGGAGUUUUUCACCUGCGAAAGUUUAUUAAGU-UUGCAGAAAA .(.(((((.(((((...((((((.........(((((.((.(((.((((((....)))))).))))))))))))))))..))))).-))))).)... ( -24.90) >DroEre_CAF1 64304 95 + 1 AUAUGGGUCCUUGGCAUAACUUUUAAUUAGCCCGCAGUGUUGGGUAACUUUUUAAAGAGUU-UUCACCUGCAAAAGUUUAUUAAGU-UUGCAGAAAA ...((.(..(((((...(((((((.........((((.((.(((.((((((....))))))-))))))))))))))))..))))).-.).))..... ( -16.90) >DroYak_CAF1 71937 97 + 1 AUAUGAAACCUUGGCAUAACUUUUAAUUAGCCCGCAGUGUUGAGUAACUUUUUAAGGAGUUUUUCACCUGCGAAAGUUUAUUAGGUUUUGCGGAAAA ..........((.(((.((((..((((.(((.(((((.((.(((.((((((....)))))).))))))))))...))).)))))))).))).))... ( -23.30) >consensus AUGUGCAACCUUGGCAUAACUUUUAAUUAGCCCGCAGUGUUGAGUAACUUUUUAAGGAGUUUUUCACCUGCGAAAGUUUAUUAAGU_UUGCAGAAAA .............(((.....((((((.(((.(((((.((.(((.((((((....)))))).))))))))))...))).))))))...)))...... (-19.90 = -19.62 + -0.28)
Location | 12,862,332 – 12,862,428 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -17.18 |
Energy contribution | -17.62 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.64 |
Structure conservation index | 0.81 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12862332 96 - 22224390 UUUUCUGCAA-ACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUCCACAU ..........-........(((((((((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))))))...... ( -19.10) >DroSec_CAF1 60505 96 - 1 UUUUCUGCAA-ACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUGCACAU .....(((((-.(((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))).)))))... ( -23.60) >DroSim_CAF1 63726 96 - 1 UUUUCUGCAA-ACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUGCACAU .....(((((-.(((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))).)))))... ( -23.60) >DroEre_CAF1 64304 95 - 1 UUUUCUGCAA-ACUUAAUAAACUUUUGCAGGUGAA-AACUCUUUAAAAAGUUACCCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGACCCAUAU ..((((((((-((((....(((((((..((((...-.)).))...))))))).(((........)))........))))).)))..))))....... ( -16.70) >DroYak_CAF1 71937 97 - 1 UUUUCCGCAAAACCUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUUCAUAU .........((((((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).))).))))))..... ( -22.40) >consensus UUUUCUGCAA_ACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUCCACAU ...................(((((((((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))))))...... (-17.18 = -17.62 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:26 2006