Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,845,311 – 12,845,417 |
Length | 106 |
Max. P | 0.731347 |
Location | 12,845,311 – 12,845,417 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 87.71 |
Mean single sequence MFE | -34.36 |
Consensus MFE | -25.30 |
Energy contribution | -25.62 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -1.88 |
Structure conservation index | 0.74 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12845311 106 + 22224390 CUCGGGCCCACAAUUUAAUCCAUGACAACGCAACGAUAUGCUUCUGCAAAGUCAGUCUAAUGAUGGCCACGGCC-GGGGGAAACCUAUUGCCAUGGCCCACACUGUA ...(((((...........((.((((...(((..((......)))))...))))(((....)))))....(((.-.(((....)))...)))..)))))........ ( -30.70) >DroSec_CAF1 44414 105 + 1 CUCGGGCCCACAAAUUAAACCCUGACAACGCAGCGAUAUGCUUCUGCAAAGUCUGUCUAAUGAUGGCCACGGCC-GG-GGAGACCUAUUGCCAUGGCCGACACUGUA .(((((..............)))))....((((.....(((....)))..(((.(((....)))(((((.(((.-((-(....)))...))).)))))))).)))). ( -34.34) >DroSim_CAF1 53377 105 + 1 CUCGGGCCCACAAUUUAAUCCCUGACAACGCAGCGAUAUGCUUCUGCAAAGUCAGUCUAAUGAUGGCCACGGCC-GG-GGAGACCUAUUGCCAUGGCCGACACUGUA .(((((..............)))))....((((.....(((....)))..(((.(((....)))(((((.(((.-((-(....)))...))).)))))))).)))). ( -34.94) >DroEre_CAF1 49166 91 + 1 ------------AUUUAAUC-CUGGCAACGCAGCGAUAUGC-UCUGCAAAGUCAGUUUGGUGAUGGUCGCGGCC-GG-GGAAACCUACUGCCAUGGCCGACACUGUA ------------........-(((((...((((.(.....)-.))))...)))))...((((.((((((.(((.-((-(....)))...))).)))))).))))... ( -33.60) >DroYak_CAF1 52193 106 + 1 CUCGGGUCCACAAUUUAAUCCCUGGCAACGCAGCGAUAUGCCUCUGCAAAGUCAGUCUAAUGAUGGCCACGGCCUGG-GGAAACCUAUUGCCAUGGCCGACACUGUA ..((((((.............(((((...((((.(......).))))...))))).........(((((.(((.(((-(....))))..))).)))))))).))).. ( -38.20) >consensus CUCGGGCCCACAAUUUAAUCCCUGACAACGCAGCGAUAUGCUUCUGCAAAGUCAGUCUAAUGAUGGCCACGGCC_GG_GGAAACCUAUUGCCAUGGCCGACACUGUA .....................(((((...((((.(......).))))...))))).....((.((((((.(((..((.(....)))...))).)))))).))..... (-25.30 = -25.62 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:21 2006