Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,823,048 – 12,823,151 |
Length | 103 |
Max. P | 0.526319 |
Location | 12,823,048 – 12,823,151 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -19.90 |
Consensus MFE | -14.48 |
Energy contribution | -14.47 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12823048 103 + 22224390 UGCCAACAAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAAAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAUCUCAAUCGAGGCCGAAG .(((...............((....))...((((.............(((.....)))..........(((.........)))..))))......)))..... ( -17.10) >DroSec_CAF1 21084 103 + 1 UGCCAGCGAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAGAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAACUCAAUCGAGGCUGAAG .(((..((((.((((....((....))....))))..(((.......(((.....)))..........(((.........)))...))).)))).)))..... ( -20.00) >DroSim_CAF1 30850 103 + 1 AGCCAGCGAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAGAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAACUCAAUCGAGGCUGAAG ((((..((((.((((....((....))....))))..(((.......(((.....)))..........(((.........)))...))).)))).)))).... ( -21.10) >DroYak_CAF1 29709 97 + 1 UGCCAGGGUGAUUUUAAAUGCGAAAGCGGAGGGAAGAGAAAUCAUAAGCCAGCAAGGUAACCAAAACAGAGGAAUCA------AAUCUCAAACGAGGCUGCAG (((.((..(((((((...(((....)))..((...((....))....(((.....)))..))........)))))))------..((((....))))))))). ( -21.40) >consensus UGCCAGCGAUAUUUUAAAUGCGAAAGCCAAGGGAAAAGAAAUCAUAAGCCAACAAGGUAACCAAAACAGAGGAAUCCUAACUCAAACUCAAUCGAGGCUGAAG .(((...............((....))...(((..............(((.....)))..((........))..............)))......)))..... (-14.48 = -14.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:06 2006