Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,795,918 – 12,796,031 |
Length | 113 |
Max. P | 0.871243 |
Location | 12,795,918 – 12,796,031 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -13.09 |
Energy contribution | -14.15 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.67 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12795918 113 + 22224390 UGCAGAAUGAUAAUUUUGAACCCCCCACUCGCCGCAAGUCGCGGAA-AAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU ....((((((.(((((((............((.((((((.(.((((-.....)))).).)))))))).((((((....)))))).....)))))))))))))............ ( -19.70) >DroSim_CAF1 2240 111 + 1 UGCAAAAUGAUAAUUUUGCACC--CCACCCACCUCAAGUCUCGAAA-AAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU ((((((((....))))))))..--.........(((((((..((((-.....)))).....(((((((.....)))))))..........................))))))). ( -21.00) >DroEre_CAF1 2496 87 + 1 --------------------------CCCCAGCUCAAGUCAUGGCA-AAACUUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUCAAAUUUCAUUUAUCUGAUUUGAU --------------------------.......(((((((((((((-((..(((((((((..((....))..))))).))))...))))))).............)))))))). ( -14.91) >DroYak_CAF1 2193 112 + 1 UGCAGAAUGAUAAUUUUGCCAC--CUCCCCACCUCAAGUCAAGGCAUAAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU .(((((((....)))))))...--.........((((((((((........((((.((((.(((((((.....)))))))......)))).))))........)))))))))). ( -22.49) >consensus UGCAGAAUGAUAAUUUUGCACC__CCACCCACCUCAAGUCACGGAA_AAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU .(((((((....)))))))..............(((((((......................((((((.....))))))((((((..((........)).))))))))))))). (-13.09 = -14.15 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:56 2006