Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,795,466 – 12,795,559 |
Length | 93 |
Max. P | 0.521435 |
Location | 12,795,466 – 12,795,559 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -21.84 |
Consensus MFE | -14.57 |
Energy contribution | -14.47 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.17 |
Mean z-score | -1.76 |
Structure conservation index | 0.67 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12795466 93 + 22224390 UUUGUAUUUUAUUUU-------UUUCUGCCCUCGAGGGUGGCCAAAAGUUUAAUG-GGCAAAUCUGUUUAAUUAAAUGAUAAACAUUUAAUUUGCGCCGCC ....((((..(((((-------(..(..(((....)))..)..))))))..))))-(((......((..(((((((((.....))))))))).)))))... ( -20.80) >DroEre_CAF1 2097 91 + 1 UUUGUAUUUUAUUUUUG---------UGCCUUCGAGGGCGCCCAAAAGUUUAAUG-UGCAAAUCUGUUUAAUUAAAUGAUAAACAUUUAAUUUGGGGCCGC (((((((...(((((((---------(((((....))))))..)))))).....)-))))))...(((((((((((((.....)))))))))..))))... ( -19.90) >DroYak_CAF1 1782 101 + 1 UUUGUAUUUUAUUUUUGUUAUUUUUCUGCCUUCGAGGGCAGGCAAAAGUUUGGUGGGGCAAAUCUGUUUAAUUAAAUGUUAAACAUUUAAUUUGGGUCGCC ..........((((((((.......((((((....))))))))))))))..(((((..(((((.((((((((.....))))))))....)))))..))))) ( -24.81) >consensus UUUGUAUUUUAUUUUUG_____UUUCUGCCUUCGAGGGCGGCCAAAAGUUUAAUG_GGCAAAUCUGUUUAAUUAAAUGAUAAACAUUUAAUUUGGGCCGCC ((((((((..(((((((........((((((....)))))).)))))))..)))...))))).......(((((((((.....)))))))))......... (-14.57 = -14.47 + -0.10)
Location | 12,795,466 – 12,795,559 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -18.27 |
Consensus MFE | -10.03 |
Energy contribution | -10.37 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.13 |
Mean z-score | -2.69 |
Structure conservation index | 0.55 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12795466 93 - 22224390 GGCGGCGCAAAUUAAAUGUUUAUCAUUUAAUUAAACAGAUUUGCC-CAUUAAACUUUUGGCCACCCUCGAGGGCAGAAA-------AAAAUAAAAUACAAA (((((.(((((((...((((((.........))))))))))))))-)......(....)))).(((....)))......-------............... ( -19.70) >DroEre_CAF1 2097 91 - 1 GCGGCCCCAAAUUAAAUGUUUAUCAUUUAAUUAAACAGAUUUGCA-CAUUAAACUUUUGGGCGCCCUCGAAGGCA---------CAAAAAUAAAAUACAAA ...((((..(((((((((.....)))))))))....((.((((..-...))))))...))))(((......))).---------................. ( -15.60) >DroYak_CAF1 1782 101 - 1 GGCGACCCAAAUUAAAUGUUUAACAUUUAAUUAAACAGAUUUGCCCCACCAAACUUUUGCCUGCCCUCGAAGGCAGAAAAAUAACAAAAAUAAAAUACAAA (((((....(((((((((.....)))))))))........))))).........((((((((........))))))))....................... ( -19.50) >consensus GGCGACCCAAAUUAAAUGUUUAUCAUUUAAUUAAACAGAUUUGCC_CAUUAAACUUUUGGCCGCCCUCGAAGGCAGAAA_____CAAAAAUAAAAUACAAA ...(((...(((((((((.....)))))))))...((((((((......))))..)))))))(((......)))........................... (-10.03 = -10.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:55 2006