Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,788,351 – 12,788,449 |
Length | 98 |
Max. P | 0.532102 |
Location | 12,788,351 – 12,788,449 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 78.96 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -15.67 |
Energy contribution | -16.62 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.18 |
Mean z-score | -1.45 |
Structure conservation index | 0.61 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12788351 98 + 22224390 UUCUGGUAUCGGAACACGCACUCCGCAUACAAAUGCUUUAAAAAUAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUGCCACAUCCACAUUUUGCGA ...((((((((.....)(((..((((((....))))........((.((((((......)))))).))))---..))))))))))................ ( -26.50) >DroVir_CAF1 13378 83 + 1 UUCUGGUAGCGAUAGACGCACUCGGCAUACAAAUGCUUGAGAAAUGUGCGUAGAUUAUCCUGCGGCUGUG---------GUGGCAUAGCCCC--------- .....((((.((((((((((((((((((....)))).))).....))))))...)))))))))(((((((---------....)))))))..--------- ( -29.60) >DroSec_CAF1 3088 98 + 1 UUCUGGUAUCGAAACACGCACUCCGCAUACAAAUGCCUUAAAAAUAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUGCCACAUCCACAUUUUCCAC ...((((((((......((.....))........((((.........((((((......))))))..)))---)...))))))))................ ( -25.50) >DroEre_CAF1 2876 98 + 1 UUCUGGUAUCGAAACACGCACUCGGCAUACAAAUGCUUUAAAAAGAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUGCCACAUCCAAAUUUAGCGG ...((((((((...((.((....(((((....)))))..........((((((......))))))....)---).))))))))))................ ( -25.10) >DroYak_CAF1 5510 93 + 1 UUCUGGUAUCGAAACACGCACUCGGCAUACAAAUGCUUUAAGAAUAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUCCCGCAUCCAAAUUA----- ...(((...((.....((((...(((...(((((((...........))((((......))))))))).)---))))))....))...))).....----- ( -21.80) >DroAna_CAF1 8416 98 + 1 UUCUGGUAUCUGUACACGCACUCGGCAUACAAAUGCUUUAAAAAUAUGCGCAGAUUAUCCUGCGGCUGGGGCGCCUCCUGUUCCAUGUCUG---GUUCAGU .....(((....))).(((.((((((........((...........))((((......)))).)))))))))....(((..(((....))---)..))). ( -25.90) >consensus UUCUGGUAUCGAAACACGCACUCGGCAUACAAAUGCUUUAAAAAUAUGCGCAGAUUAUCCUGCGUUUGGG___CCUGCGAUGCCACAUCCACAUUUU_CG_ ...((((((((.............((((....))))............(((((......))))).............))))))))................ (-15.67 = -16.62 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:53 2006