Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,722,312 – 12,722,410 |
Length | 98 |
Max. P | 0.500000 |
Location | 12,722,312 – 12,722,410 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -13.37 |
Consensus MFE | -9.30 |
Energy contribution | -9.38 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.68 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12722312 98 - 22224390 CUUGGCAUUAAUUCGAAUAAAGAAAAAAAAAAACGAAAAUCGCAAACGAAAUUAUAAGCCCAGUUGUCAAUGCCAAUAAAACGGAA-UGGCUGCCAAAA .(((((.................................(((....))).......((((...((((.............))))..-.))))))))).. ( -13.32) >DroSec_CAF1 74558 93 - 1 CUUGGCAUUAAUUCGAA-----AAAAAAAAAAACCAAAAUCGCAAACUAAAUUAUAAGCUCAGUAGUCAAUGCCAAUAAAAUGGAA-UGGCUGCCAAAA .(((((...........-----...................((..............)).....(((((...(((......)))..-)))))))))).. ( -13.74) >DroSim_CAF1 59712 91 - 1 CUUGGCAUUAAUUCAAA--------AAAAAAAACCAAAAUCGCAAACUAAAUUAUAAGCUCAGUUGUCAAUGCCAAUAAAAUGGAACUGGUUGCCAAAA .((((((..........--------................((..............))((((((.......(((......))))))))).)))))).. ( -11.65) >DroEre_CAF1 73888 92 - 1 CUUGGCAUUAAUUCGAA--A---AAAAAAUGAACGAAAAUCGCAAACCAAAUUAUAAAACCAGUUGUCAUUGCCAAUAAAAUGGAA-UGGUUGCCAAA- .(((((.....((((..--.---..........))))....................(((((....(((((........)))))..-)))))))))).- ( -16.02) >DroYak_CAF1 78250 96 - 1 CUUGGCAUUAAUUCGAA--ACGAAAAAAAAAAACCAAAAUCGCAAACUAAAUUAUAAACUCAAUUGUCAUUGCCAAUAAAAUGGAA-UAGUUGCCAAAU .((((((...((((...--......................((((....((((........))))....))))((......)))))-)...)))))).. ( -12.10) >consensus CUUGGCAUUAAUUCGAA__A__AAAAAAAAAAACCAAAAUCGCAAACUAAAUUAUAAGCUCAGUUGUCAAUGCCAAUAAAAUGGAA_UGGUUGCCAAAA .(((((((((.(((...........................(((.....((((........)))).....)))((......))))).))).)))))).. ( -9.30 = -9.38 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:30 2006