Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,665,547 – 12,665,644 |
Length | 97 |
Max. P | 0.842670 |
Location | 12,665,547 – 12,665,644 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -26.57 |
Consensus MFE | -23.59 |
Energy contribution | -23.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.89 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12665547 97 + 22224390 CUGCUGCAGCCGCUGUCUUGGUACAUUUAUAAGCAACCCUUGCUAACCGGUUUCUUCGACUCUGUGUUUCCUU--UUUCGGCUGCUGCUGCACUUGAUU .(((.(((((.((((....((.((((.....((((.....))))...(((.....))).....))))..))..--...)))).))))).)))....... ( -27.00) >DroEre_CAF1 19418 98 + 1 CUGCUGCAGCCGCUGUCUUGGUACAUUUAUAAGCAACCCUUGCUAACUGGUUUGCUCGACUCUGGGUUUCCUUU-UUUCGGCUGCUGCUGCACUUGAUU .(((.(((((.((((................((((.....))))....((...(((((....)))))..))...-...)))).))))).)))....... ( -26.90) >DroYak_CAF1 22288 99 + 1 CUGCUGCAGCCGCUGUCCUGGUACAUUUAUAAGCAACCCUUGCUAACCGGUUUCUUCGACUCUGUGUUUCCUUUUUUUCGGCUGCUGCUGCACUUGAUU .(((.(((((.((((....((.((((.....((((.....))))...(((.....))).....))))..)).......)))).))))).)))....... ( -25.80) >consensus CUGCUGCAGCCGCUGUCUUGGUACAUUUAUAAGCAACCCUUGCUAACCGGUUUCUUCGACUCUGUGUUUCCUUU_UUUCGGCUGCUGCUGCACUUGAUU .(((.(((((.((((....((.((((.....((((.....))))...(((.....))).....))))..)).......)))).))))).)))....... (-23.59 = -23.70 + 0.11)
Location | 12,665,547 – 12,665,644 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -24.46 |
Energy contribution | -24.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.94 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12665547 97 - 22224390 AAUCAAGUGCAGCAGCAGCCGAAA--AAGGAAACACAGAGUCGAAGAAACCGGUUAGCAAGGGUUGCUUAUAAAUGUACCAAGACAGCGGCUGCAGCAG ...........((.(((((((...--..(....).....(((..........((.((((.....)))).))...........)))..))))))).)).. ( -25.40) >DroEre_CAF1 19418 98 - 1 AAUCAAGUGCAGCAGCAGCCGAAA-AAAGGAAACCCAGAGUCGAGCAAACCAGUUAGCAAGGGUUGCUUAUAAAUGUACCAAGACAGCGGCUGCAGCAG ...........((.(((((((...-...((....))...(((((((((.((.........)).)))))).....((...)).)))..))))))).)).. ( -27.10) >DroYak_CAF1 22288 99 - 1 AAUCAAGUGCAGCAGCAGCCGAAAAAAAGGAAACACAGAGUCGAAGAAACCGGUUAGCAAGGGUUGCUUAUAAAUGUACCAGGACAGCGGCUGCAGCAG ...........((.(((((((.......(....)(((......(((.((((..........)))).))).....)))..........))))))).)).. ( -25.20) >consensus AAUCAAGUGCAGCAGCAGCCGAAA_AAAGGAAACACAGAGUCGAAGAAACCGGUUAGCAAGGGUUGCUUAUAAAUGUACCAAGACAGCGGCUGCAGCAG ...........((.(((((((.......(....).....(((.............((((.....))))..............)))..))))))).)).. (-24.46 = -24.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:58 2006