Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,612,371 – 12,612,480 |
Length | 109 |
Max. P | 0.904786 |
Location | 12,612,371 – 12,612,480 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -35.05 |
Consensus MFE | -25.02 |
Energy contribution | -25.90 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -2.45 |
Structure conservation index | 0.71 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12612371 109 - 22224390 GAGAAAGCUGCCAAGGAAAGCGGCGAA-AACCCGGCAUGAGCAAAAGCACGUGCA-GCAACGAACUUUCGCUGCAAUGGCGGAAAAUCGUGGCAAUUGGGCA--AGUGG------AAUG ......(((((........)))))...-..(((((((((.((....)).))))).-((.((((..(((((((.....)))))))..)))).))...))))..--.....------.... ( -36.60) >DroSec_CAF1 1786 110 - 1 GAGAAAGCUGCCAAGGAAAGCGGAGAAAAACCCGGCAUGAGCAAAAGCACGUGCA-CCAGCCAACUUUCGCUGCAAUGGCGGAAAAUCGUGGUAAUUGGGAG--AUUAG------AAAG .......((.((((((....(((........)))(((((.((....)).))))).-)).((((..(((((((.....))))))).....))))..)))).))--.....------.... ( -32.00) >DroSim_CAF1 1760 110 - 1 GAGAAAGCUGCCAAGGAAAGCGGAGAAAAACCCGGCAUGAGCAAAAGCACGUGCA-CCAGCGAACUUUCGCUGCAAUGGCGGAAAAUCGUGGCAAUUGGGAG--AGUGG------AAAG .......((.((((((....(((........)))(((((.((....)).))))).-)).((((..(((((((.....)))))))..)))).....)))).))--.....------.... ( -32.80) >DroEre_CAF1 2113 118 - 1 GCGAAAGCUGGCAAGGAAAGCGGGGAA-AACCCGGCAAGAGCAAGACCACGUGCAACCUACGAACUUUCGCUGCAAUGGCGGAAAAUCGUGGCUAUUGCGAGAGAGUGGCAAGUGAAAG ((....))(.((.......((.(((..-..))).))........(.((((.(((((.((((((..(((((((.....)))))))..))))))...))))).....)))))..)).)... ( -38.80) >consensus GAGAAAGCUGCCAAGGAAAGCGGAGAA_AACCCGGCAUGAGCAAAAGCACGUGCA_CCAACGAACUUUCGCUGCAAUGGCGGAAAAUCGUGGCAAUUGGGAG__AGUGG______AAAG .......((.((((((....(((........)))(((((.((....)).)))))..)).((((..(((((((.....)))))))..)))).....)))).))................. (-25.02 = -25.90 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:37 2006