Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,611,894 – 12,611,988 |
Length | 94 |
Max. P | 0.567478 |
Location | 12,611,894 – 12,611,988 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 91.85 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -20.62 |
Energy contribution | -21.38 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.14 |
Mean z-score | -1.59 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12611894 94 - 22224390 ACCGCAUCCGCAAUUUGUGGUGUUGCGGUCGA-ACCUG-CACCUUCG-AAUCGGCAACAAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA .........((((..(((((((((((((((((-(....-....))))-.)))((((.....))))..)))))))).)))....)))).......... ( -28.10) >DroSec_CAF1 1276 97 - 1 ACCGCAUCCGCAAUUUGUGGGGUUGCGGUCGAAACCUGCCACCUUCGGAAUCGGCCACUAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA .........((((..(((((((((((((((((..((..........))..)))))).(....)....))))).))))))....)))).......... ( -27.60) >DroSim_CAF1 1276 96 - 1 ACCGCAUCCGCAAUUUGUGGUGUUGCGGUCGA-ACCUGCCACCUUCGGAAUCGGCAACAAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA ((((((.((((.....))))...))))))...-.............(((((.((((.....))))..((((((....)))....)))....))))). ( -26.90) >DroEre_CAF1 1488 93 - 1 ACCGCAUCCGCAAUUCGUG-UGUUGCGGUCGA-ACCUG-CACCUUCG-UAUCAGCAACAAAUGCCCGGCUGCACCUACGUCACUUGCAACAAUUCCG .........((((..((((-.((.(((((((.-...((-(......)-))...(((.....))).))))))))).))))....)))).......... ( -21.50) >consensus ACCGCAUCCGCAAUUUGUGGUGUUGCGGUCGA_ACCUG_CACCUUCG_AAUCGGCAACAAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA .........((((..((((((((((((((....)))................((((.....))))..)))))))).)))....)))).......... (-20.62 = -21.38 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:36 2006