Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,408,529 – 1,408,624 |
Length | 95 |
Max. P | 0.588536 |
Location | 1,408,529 – 1,408,624 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 64.05 |
Mean single sequence MFE | -25.12 |
Consensus MFE | -12.55 |
Energy contribution | -12.17 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.54 |
Mean z-score | -1.32 |
Structure conservation index | 0.50 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1408529 95 - 22224390 CGGAUCCACAAGCAUGUCGACAUCCAGUGGAAGCCACUGGAGCUGACCGACAUCGCUGGCUUCCGCAACGCCGUGUAGAAACACAAUGAGGCCCA ((((..(...(((((((((...((((((((...))))))))......)))))).))).)..))))....(((((((....)))).....)))... ( -34.00) >DroVir_CAF1 443 88 - 1 AAAACCAAUCACAGCGUAGAUUUAUGGUGGAAGCCGCUUAAGCUCAGCGACACGGCUGGUUUCCAGACAAUAACAUAGAUAGUUGAA---G---- ...........((((....(((((((.((((((((((....))..(((......)))))))))))........))))))).))))..---.---- ( -22.90) >DroGri_CAF1 15 83 - 1 AAAACCCAUCACAGUAUAGAUUUAUGGUGGAAGCCACUUCAGCUCAGCGACACCGCUGGUUUCCAGACGAUAACAUAAGUAAA------------ ...................(((((((((((...))))...(((.(((((....))))))))............)))))))...------------ ( -16.70) >DroSec_CAF1 14003 95 - 1 CGGAUCCACAAGCAUGUCGACAUCCAGUGGAAGCCACUAGAGCUGACCGACAUCGCUGGCUUCCGCAACGCCGUGUAGAAACACAACGAGGCCCA .(((..(...(((((((((...((.(((((...))))).))......)))))).))).)..)))((..((..((((....))))..))..))... ( -28.30) >DroEre_CAF1 10332 95 - 1 CGGGUCCACAAGCAUGUCGACAUCCAGUGGAAGCCACUGGAGCUCACCGACAUCGCUGGCUUCCGCAACGCAGUGUAGGAACACAACGACGCCCA .((((.....(((((((((...((((((((...))))))))......)))))).))).((....))..((..((((....))))..))..)))). ( -34.00) >DroMoj_CAF1 13 82 - 1 AAAACUCAUCACAGCGUAGAUUUAUGGUGGAAGCCACUCGAACUGAAGGAUACGGCGGGUUUCCAGACAAUAACAUAGAUAC------------- ...................(((((((.((((((((..(((............)))..))))))))........)))))))..------------- ( -14.80) >consensus AAAACCCACAACAAUGUAGACAUACAGUGGAAGCCACUGGAGCUCACCGACACCGCUGGCUUCCACAACACAACAUAGAAACACAA____G____ ...........................(((((((((.(((.(........).))).))))))))).............................. (-12.55 = -12.17 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:41 2006