Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,541,237 – 12,541,345 |
Length | 108 |
Max. P | 0.680144 |
Location | 12,541,237 – 12,541,345 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.06 |
Mean single sequence MFE | -42.74 |
Consensus MFE | -24.59 |
Energy contribution | -25.80 |
Covariance contribution | 1.21 |
Combinations/Pair | 1.26 |
Mean z-score | -1.51 |
Structure conservation index | 0.58 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12541237 108 - 22224390 GUCGUAGUGGCUGAUAUUAUGGUGGCAACA------GACAC------GGGUAUGGGUGUUGGUGGCUUCACAUCCAAACGUUCGAUAUUCAUGCUGCCGGCACUGCUGGCGGCCAGAGAA (((((.((.(((........))).)).)).------)))..------(((((((..((((((((......)).)).))))..).))))))..(((((((((...)))))))))....... ( -37.00) >DroPse_CAF1 50176 90 - 1 GGGGUCGGUGUG---AG---------------------------UGUGGGUGUGGGGGUGGGCGGUUUGGCGUCCAGGCGCUCGAUGUUAAGGCUGCCCGCACUGCUGCUGGCCAGUGAA ..((((((((..---((---------------------------(((((((((.((.(((((((.(((((...)))))))))).)).))...)).)))))))))..))))))))...... ( -38.30) >DroSec_CAF1 5300 105 - 1 GGCGUAGUGGCG---AUUAUGGUGGCAGCA------GCCAC------UGGUACGGGUGUUGGUGGCUUCACAUCCAAGCGCUCGAUGUUCAGGCUGCCGGCACUGCUGCCGGCCAGAGAA .......((((.---.....((((((....------)))))------)((((..((((((((..((((.(((((.........)))))..))))..))))))))..)))).))))..... ( -45.40) >DroEre_CAF1 5972 117 - 1 GGCGCAGUGGUU---AUGACGGUGGCAGCAGCAGCAGCCACUUGUGGUGGUUUGGGUGUGGGAGGCUUCGCAUCCAAGCGCUCGAUGUUCAGGCUGCCGGCACUGCUGCCGGCCAGAGAA (((((((..((.---....(((..((.(((..(((.((((....)))).(((((((((((((....))))))))))))))))...)))....))..)))..))..))))..)))...... ( -53.20) >DroPer_CAF1 49269 96 - 1 GGGGUCGGUGUG---AGUGUGA---------------------GUGUGGGUGUGGGUGUGGGCGGUUUUGCGUCCAGGCGCUCGAUGUUAAGGCUGCCCGCACUGCUGCUGGCCAGUGAA ..(((((((...---(((...(---------------------((((((((....((.((((((......)))))).))((.(........))).)))))))))))))))))))...... ( -39.80) >consensus GGCGUAGUGGUG___AUUAUGGUGGCA_CA______G_CAC___UG_GGGUAUGGGUGUGGGCGGCUUCGCAUCCAAGCGCUCGAUGUUCAGGCUGCCGGCACUGCUGCCGGCCAGAGAA .......((((..........(((((..........))))).......((((..(((((((((((((..(((((.........)))))...)))))))))))))..)))).))))..... (-24.59 = -25.80 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:01 2006