Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,500,687 – 12,500,786 |
Length | 99 |
Max. P | 0.619183 |
Location | 12,500,687 – 12,500,786 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -17.65 |
Energy contribution | -16.93 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.22 |
Mean z-score | -1.54 |
Structure conservation index | 0.64 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12500687 99 + 22224390 CCUUUUCUGCUUCUUGUUCUUUG--UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGGG----------------GGGAUACAAAAAGAGA .(((((...(((((..((((((.--.....(((.(((((....)).....(((((((...)))))))))).))).---))))))..))----------------))).....)))))... ( -26.80) >DroSec_CAF1 30150 117 + 1 CCUUUUCUGCUUCUUGUUCUUUGUGUUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGGGAAAAGAGGGAUGGGGGGUGGUACAAAUAGAGA .((((.(..(((((..((((((..(((((.(((.(((((....)).....(((((((...)))))))))).))).---..))))).......))))))..)))))..).......)))). ( -29.50) >DroSim_CAF1 27106 117 + 1 CCUUUUCUGCUUCUUGUUCUUUGUGUUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGGGAAAAGAGGGAUGGGGGGUGGUACAAAUAGAGA .((((.(..(((((..((((((..(((((.(((.(((((....)).....(((((((...)))))))))).))).---..))))).......))))))..)))))..).......)))). ( -29.50) >DroEre_CAF1 31402 107 + 1 CAUUUUCUGC---UUGUUCUUUG--UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGAGAAAAGAGAGUUGG-----GGUACAAAUAGAGA .(((((((.(---(..((((((.--.....(((.(((((....)).....(((((((...)))))))))).))).---))))))..))...)))))))...-----.............. ( -26.50) >DroYak_CAF1 25654 110 + 1 CGUUUUCCGCUUCUUGUUCUUUG--UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGAGCAAAGCGAGUUGG-----GGUACAAAUAGAGA .((.((((((((((((((((((.--((((.(((((((.((((((...))))))((((...)))).))))))).))---)).))).)))).))).))).)))-----)).))......... ( -27.60) >DroAna_CAF1 38296 98 + 1 CCCUUUUUUUUUUUUCUUCUCUG--UUUUGUUUGUGCGGGUUAUCAAAUAGUCGAUAAAUUAUUGGCAUAGGGAAUGGAAGGAAGGAGAAACUG--------------------UGGAGA (((..(((((((((((((((...--..((.(((((((.(((((((........))))....))).))))))).)).)))))))))))))))..)--------------------.))... ( -24.90) >consensus CCUUUUCUGCUUCUUGUUCUUUG__UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA___AAGGAAUGAGAAAAGAG_G_UGG_____GGUACAAAUAGAGA ............((((((((((...((((..((((((.(((((((........))))....))).))))))))))...))))))))))................................ (-17.65 = -16.93 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:41 2006