Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,472,344 – 12,472,464 |
Length | 120 |
Max. P | 0.961309 |
Location | 12,472,344 – 12,472,464 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.06 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -27.79 |
Energy contribution | -27.40 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.07 |
Mean z-score | -1.19 |
Structure conservation index | 0.97 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12472344 120 - 22224390 ACUGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGUGUU .(((.........)))..(((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..((...((((.....))))...)).)))... ( -28.00) >DroVir_CAF1 3599 120 - 1 ACAGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU ............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...((((.....))))...))..))... ( -29.00) >DroGri_CAF1 2155 120 - 1 ACGGAAUAGAAAGCAGGAACCAAGUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU ............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...((((.....))))...))..))... ( -29.30) >DroWil_CAF1 9947 120 - 1 ACUGAAUAAAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGUGUU .(((.........)))..(((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..((...((((.....))))...)).)))... ( -28.00) >DroMoj_CAF1 3419 120 - 1 ACAGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU ............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...((((.....))))...))..))... ( -29.00) >DroPer_CAF1 3199 120 - 1 ACUGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAGGGAAAACCGGGUGUU ..(((((.....((.(....)..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))...)).)))))..((.((.....))..))... ( -28.40) >consensus ACUGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU ............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...(((........)))..))..))... (-27.79 = -27.40 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:24 2006