Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,465,152 – 12,465,265 |
Length | 113 |
Max. P | 0.875285 |
Location | 12,465,152 – 12,465,265 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 90.86 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -21.05 |
Energy contribution | -21.49 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.77 |
Structure conservation index | 0.89 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12465152 113 - 22224390 AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUGUUACUAUCAACAUAGAUUUAUACGUUCUAUCCGGCCUAGAGCGUGCUCUC .....((((((..((((...((((.(((....((((((((((((((..(((..((((....))))...)))....)))))))))).)))).))))))).))))..)))))).. ( -27.70) >DroSec_CAF1 3982 113 - 1 AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUCAAAGAUUAGAUAUUAAUGUUACUAUCAACGUCGAUUUAUACCAUCUAUCCGGCCUAGAGCGUGCUCUU .....((((((..((((...((((.(((...(((((.....))))).((((((...((..(((((......)))))..))...))..))))))))))).))))..)))))).. ( -25.00) >DroSim_CAF1 4002 113 - 1 AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUGUUACUAUCAACGUAGAUUUAUACCAUCUAUCCGGCCUAAAGCGUGCUCUU .....((((((...((....((((.(((....((..((((((((((..(((..((((....))))...)))....))))))))))...)).)))))))....)).)))))).. ( -23.20) >DroYak_CAF1 4024 113 - 1 GUACUGAGCACUAUCUGAUUACCGUGAUUCCAGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUAUUACUAUCAACGUAGAUUUAUACGAACCAUCCGGCCAAGAACGUGUUCCC .....((((((..(((.....(((.(((........((((((((((..(((..((((....))))...)))....))))))))))......))))))...)))..)))))).. ( -19.04) >consensus AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUGUUACUAUCAACGUAGAUUUAUACCAUCUAUCCGGCCUAGAGCGUGCUCUC .....((((((..((((...((((.(((........((((((((((..(((..((((....))))...)))....))))))))))......))))))).))))..)))))).. (-21.05 = -21.49 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:16 2006