Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,445,796 – 12,445,910 |
Length | 114 |
Max. P | 0.904147 |
Location | 12,445,796 – 12,445,910 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -24.04 |
Consensus MFE | -13.21 |
Energy contribution | -14.21 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.82 |
Structure conservation index | 0.55 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904147 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12445796 114 - 22224390 UAAUUAACGCACUAUUUGUGUUGCAAUGAAAUCAACGUAACAGC------AAAACCAUAAAACAUGCGAGCACAACAACACAAAAUAACAUGAGUACAGCGAACAGCUGUUUCAGCGACA .......(((....(((((((((...((....))..((....((------(.............)))....))..)))))))))......((((.(((((.....))))))))))))... ( -25.12) >DroSec_CAF1 9951 109 - 1 -----GUUGCACUAUAUGUGUUGCAAUAAAAUCAACGUAACAGC------AACACCACAAAACAUGCGAGCACAACAACACAAAAUAACAUGUGUACAGCAAACAGCUGUUUCAGCAACA -----(((((.......(((((((..................))------)))))............(((.......(((((........)))))(((((.....)))))))).))))). ( -25.57) >DroSim_CAF1 12710 114 - 1 UGAUUAACGCACUAUAUGUUUUGCAAUGAAAUCAACGUAACAGC------AACACCACAAAACAUGCGAGCACAACAACACAAGAUAACAUGUGUACAGCAAACAGCUGUUUCAGCAACA .......((((.....(((((((...((....))..((....))------.......))))))))))).((......(((((........)))))(((((.....)))))....)).... ( -20.40) >DroEre_CAF1 8808 117 - 1 UCGCAAACGCAG--UUUGUUUUGCACUGAAAUCAACGUAACAGUAACUGUAAACCCACAAGAUAUGCGAGCACAACAACACAAAAUAACAUGUGGUCAGCGAACAUCUGACGCAGCGUC- .(((...((((.--((((((((((((((............))))....)))))...)))))...)))).((.......((((........))))(((((.......))))))).)))..- ( -25.70) >DroYak_CAF1 11945 114 - 1 UGAUAAACGCACUAUUUGCUUUGCAAUGAAAUCAACGUAACAGC------AAAACCACAAAACAUGCGAGCACAACAACACAAAAUAACAUGUGGACAGCUAACAGCUGAUGCAGCGCCA .......(((....((((((((((..((....))..)))).)))------)))...........((((..........((((........))))..((((.....)))).)))))))... ( -23.40) >consensus UGAUAAACGCACUAUUUGUUUUGCAAUGAAAUCAACGUAACAGC______AAAACCACAAAACAUGCGAGCACAACAACACAAAAUAACAUGUGUACAGCAAACAGCUGUUUCAGCGACA .......(((......((((.(((..((....)).((((.........................)))).))).)))).............((((.(((((.....))))))))))))... (-13.21 = -14.21 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:09 2006