Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,416,460 – 12,416,553 |
Length | 93 |
Max. P | 0.658389 |
Location | 12,416,460 – 12,416,553 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 83.91 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -20.89 |
Energy contribution | -20.95 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.51 |
Structure conservation index | 0.87 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12416460 93 - 22224390 GACAGUUGCCAAUUGACAGUUGACAGUUGCUAGUUGCCAGUUGACAGUUUCCAGAAACGCAGCAGGAUGUCGCUGCAAACGAAAAGGCAGCAC ....((((((........((..((....((.....))..))..)).((((....))))(((((........))))).........)))))).. ( -27.10) >DroSec_CAF1 10550 79 - 1 GACAGUUGCCAUUUGACAGUUGACAG--------------UUGACAGUUUCCAGAAACGCAGCAGGAUGUCGCUGCAAACGAAAAGGCAGCAC ....((((((.((((.((((.(((((--------------(((...((((....)))).))))....))))))))))))......)))))).. ( -23.10) >DroSim_CAF1 11226 79 - 1 GACAGUUGCCAUUUGACAGUUGACAG--------------UUGACAGUUUCCAGAAACGCAGCAGGAUGUCGCUGCAAACGAAAAGGCAGCAC ....((((((.((((.((((.(((((--------------(((...((((....)))).))))....))))))))))))......)))))).. ( -23.10) >DroYak_CAF1 10334 72 - 1 GACAGUUGCCA-------GCAGCCAG--------------UUGCCAGUUUCCAGGACCGCAGCAGGAUGUCGCUGCAAACGAAAAGGCAGCAC ....((((((.-------((((....--------------))))..............(((((........))))).........)))))).. ( -23.00) >consensus GACAGUUGCCAUUUGACAGUUGACAG______________UUGACAGUUUCCAGAAACGCAGCAGGAUGUCGCUGCAAACGAAAAGGCAGCAC ....((((((....................................((((....))))(((((........))))).........)))))).. (-20.89 = -20.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:54 2006