Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,403,998 – 12,404,105 |
Length | 107 |
Max. P | 0.810361 |
Location | 12,403,998 – 12,404,105 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 84.64 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -15.29 |
Energy contribution | -18.04 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.13 |
Mean z-score | -2.22 |
Structure conservation index | 0.64 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12403998 107 + 22224390 CUGCAUUAAACUCAGUAUUUGUGCUAACAAAAUUAGUUUCAAAGCGAAA--AAACUACUCUAAGCUAUGGUACUUUUGAGUUU-UAUGUUUUGAAAGUAUUUUUGUUAGC ......................((((((((((.((.((((((((((.((--(....((((.(((........)))..))))))-).)))))))))).)).)))))))))) ( -26.50) >DroSec_CAF1 6692 107 + 1 CUGCAUUAAACUCAGUAUUCGUGCUAACAAAAUUAGUUUCAAAGCGAAA--AAACAACUCUAAGCUAUGGUACUUUUGAGUUU-UAUGUUCUGGAAGUAUUUUUGUUAGC ......................((((((((((.((.(((((.((((.((--(....((((.(((........)))..))))))-).)))).))))).)).)))))))))) ( -22.50) >DroEre_CAF1 7121 110 + 1 GUGCAUUAAACUCAGUAUUUCUGCAAACAAAAUCACUUUUAAAACGAAAAAAAACUACCAAAAACUAUGGUAGUUUUGAGUUUUUUUGGCUUGGAAGUAUUUUUGUUAGC .((((..((........))..))))(((((((..((((((((..((((((((((((((((.......)))))))).....))))))))..))))))))..)))))))... ( -28.40) >DroYak_CAF1 7051 106 + 1 GUGCAUUAAACUCAGCAUUUCUGCAAAGAUAAUCAGUUUCAAAACGAAA---AACUAUUGUAAACUAUGGUUCUUUUGAGUUU-UUUGUUUUAAAAGUAUUUUUAUUAGC ..((..........(((....)))(((((((.....(((.(((((((((---((((...(..(((....)))..)...)))))-)))))))))))..)))))))....)) ( -17.80) >consensus CUGCAUUAAACUCAGUAUUUCUGCAAACAAAAUCAGUUUCAAAACGAAA__AAACUACUCUAAACUAUGGUACUUUUGAGUUU_UAUGUUUUGAAAGUAUUUUUGUUAGC ......................((((((((((.((.((((((((((((...(((((.......((....)).......))))).)))))))))))).)).)))))))))) (-15.29 = -18.04 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:49 2006