Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,401,026 – 12,401,130 |
Length | 104 |
Max. P | 0.883254 |
Location | 12,401,026 – 12,401,130 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -12.68 |
Energy contribution | -11.76 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.29 |
Mean z-score | -2.05 |
Structure conservation index | 0.44 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12401026 104 + 22224390 CUUGUGAUGAAUGCUAGGUGGUGAUUCAUCGCUAAAAACGUAAUGAAUGAAAAUACAGGGUACAUAUA--------G----GUACGUUUG----UAUGUGUAUGCUUAGCGUGCUUGAGU ...((((((((((((....))).))))))))).......(((.((.((....)).))...)))...((--------(----(((((((.(----(((....))))..))))))))))... ( -27.50) >DroSec_CAF1 3800 90 + 1 CUUGU--------------GGUGAUUCACCGCUGAAAACGUAAUGAAUGAAACUACAGGGUACAUAUA--------G----GUACGUAUG----UAUGUGUAUGCUUAGGCUGCUUGAGU (((((--------------(((.(((((..(((....).))..)))))...))))))))(((((((((--------.----((....)).----)))))))))(((((((...))))))) ( -25.40) >DroSim_CAF1 4701 90 + 1 CUUGU--------------GGUGAUUCACCGCUGAAAACGUAAUGAAUGAAACUACAGGGUACAUAUA--------G----GUACGUAUG----UAUGUGUAUGCUUAGGCUGCUUAAGU (((((--------------(((.(((((..(((....).))..)))))...))))))))(((((((((--------.----((....)).----)))))))))(((((((...))))))) ( -25.30) >DroEre_CAF1 4119 120 + 1 UUCGUGAUGCAUACUAAGCGGUGAUUCACUGUUGAAGCCGUAAUGAAUGGAACUGCAGGGUACAUAUGUACAUACAUAUAUGCACGUAUGUACAUAUGUGUAUGCUUAGACUGCUUGAGC ((((....(((..(((((((........((((.....((((.....))))....))))..(((((((((((((((..........)))))))))))))))..)))))))..))).)))). ( -38.40) >DroYak_CAF1 3985 108 + 1 CCCGUGAUGAAUACUAGGAGGUGAUUCACUGCUGCAAACGUAAUGAAUGGAACUGCAGGGUACAUAUA--------UGUAUAUACGUAUG----UAUGUGUAUGCUUAGACUGCUUAAGU (((((..((((((((....))).)))))..))((((..(((.....)))....)))))))((((((((--------(((((....)))))----)))))))).((((((.....)))))) ( -26.40) >consensus CUUGUGAUG_AU_CUA_G_GGUGAUUCACCGCUGAAAACGUAAUGAAUGAAACUACAGGGUACAUAUA________G____GUACGUAUG____UAUGUGUAUGCUUAGACUGCUUGAGU (((((..............((((...))))........(((.....))).....)))))((((((((((........................))))))))))((((((.....)))))) (-12.68 = -11.76 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:47 2006