Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,399,329 – 12,399,431 |
Length | 102 |
Max. P | 0.718034 |
Location | 12,399,329 – 12,399,431 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -30.94 |
Consensus MFE | -28.16 |
Energy contribution | -28.24 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.21 |
Structure conservation index | 0.91 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12399329 102 + 22224390 GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAAAAUCCGCUUGAUUCCUUGCGGCGA-UUCGAUAAUGUU .....(((.((((.((((..(((((...((((((.........)))))))))))..))))..........(((..(....)..)))))))-.)))........ ( -29.90) >DroSec_CAF1 2181 102 + 1 GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUCACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGCGA-UUCGAUGAUGUU ((..(((((........)))))(((...((((((.........)))))))))))..(((((((((....((((.((....)).))))...-))))).)))).. ( -31.60) >DroSim_CAF1 3082 102 + 1 GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUCACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGCGA-UUCGAUGAUGUU ((..(((((........)))))(((...((((((.........)))))))))))..(((((((((....((((.((....)).))))...-))))).)))).. ( -31.60) >DroEre_CAF1 2441 102 + 1 GGUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAACCGCUAGAUUCUUUGCGGUGG-UUCGAUGAAGAA ........(((...((((..(((((...((((((.........)))))))))))..))))(((((...(((((..........)))))..-)))))..))).. ( -30.10) >DroYak_CAF1 2275 103 + 1 GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGUGCAAUCAAUGAAGUU (.(((((.(((...((((..(((((...((((((.........)))))))))))..))))...)))...((((.((....)).))))))))).)......... ( -31.50) >consensus GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGCGA_UUCGAUGAUGUU ....((.....)).((((..(((((...((((((.........)))))))))))..))))(((((....((((.((....)).))))....)))))....... (-28.16 = -28.24 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:46 2006