Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,400,124 – 1,400,216 |
Length | 92 |
Max. P | 0.706948 |
Location | 1,400,124 – 1,400,216 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 73.33 |
Mean single sequence MFE | -33.05 |
Consensus MFE | -12.02 |
Energy contribution | -14.53 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.20 |
Mean z-score | -2.79 |
Structure conservation index | 0.36 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1400124 92 + 22224390 AGUGGGAGUGCGAUUGGCGGUGCGAGUGGGAGGGGGUCAGCGCGAAUGCGCCAGCUCGCUCGCUCGGACGCACGCAAA-AAAUAUGCAAAAAC .(((....((((....(((.(.((((((((...((((..((((....))))..)))).)))))))).)))).))))..-...)))........ ( -33.80) >DroSec_CAF1 5536 92 + 1 AGUGGGAGUGUGAUUGGCGGUGAGAGUGGGAGGGGGUCGGCGCGAGUGCGCCAGCUCGCUCGCUCGGACGCACGCAAA-AAAUAUGCAAAAAC .......(((((.((.((((((.(((((((...((((.(((((....))))).)))).)))))))...))).)))...-)).)))))...... ( -35.50) >DroEre_CAF1 2056 76 + 1 ------------AGUGGGAGUUUGAGUGGGAAGGGGGCAGCGCGAGUGCGCCAGCUCG----CUCGAACGCACGCAAA-AAAUAUGCAAAAAC ------------.(((...(((((((((((...((.(((.(....)))).))..))))----))))))).)))(((..-.....)))...... ( -32.20) >DroAna_CAF1 12332 88 + 1 AGUGUGAGUGGGAUGGGUAGU---CGAGAGAGCAGGUCAGCAAUAGUGCA--ACCUGCCUCGCUCGGACGCAUGCAAAAAAAUCUGCAAAAAC .((.((((((((........(---(....))((((((..(((....))).--)))))))))))))).))...((((........))))..... ( -30.70) >consensus AGUGGGAGUG_GAUUGGCAGUG_GAGUGGGAGGGGGUCAGCGCGAGUGCGCCAGCUCGCUCGCUCGGACGCACGCAAA_AAAUAUGCAAAAAC ...................((.((((((((..(((....((((....))))...))).)))))))).))....(((........)))...... (-12.02 = -14.53 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:33 2006