Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,384,944 – 12,385,036 |
Length | 92 |
Max. P | 0.994491 |
Location | 12,384,944 – 12,385,036 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.93 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -14.36 |
Energy contribution | -14.68 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.15 |
Structure conservation index | 0.66 |
SVM decision value | 2.48 |
SVM RNA-class probability | 0.994491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12384944 92 - 22224390 -CACAGUUAGCCG--------------CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU-UGUCCAC--AGU-CCAUCCUGCUCCA------ACUCCU--- -...(((((((.(--------------.((.((.(((((((((..(........)..)))))))))))((((((....-.....))--)))-)..))).)))..)------)))...--- ( -23.40) >DroPse_CAF1 719 102 - 1 -CACAGUUAGCUA--------------CGACACUCGCUAAUGCCGUCUCAUUAUGUUUCAUUAGCGCUGACUGUACCUCUGUACCCCCACUUCAGUUCAGUUCGUUCCUCAUCUACA--- -.(((((((((..--------------.(.....)(((((((.(((......)))...))))))))))))))))....(((.((..........)).))).................--- ( -20.40) >DroSim_CAF1 16767 92 - 1 -CACAGUUAGCCG--------------CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU-UGUCCAC--AGU-CCAUCCUGCUCCA------UCUCCU--- -.......(((.(--------------.((.((.(((((((((..(........)..)))))))))))((((((....-.....))--)))-)..))).)))...------......--- ( -21.90) >DroWil_CAF1 29032 108 - 1 ACACUUUUAGCUGGACGACGACGACGACGACACUCGCUAAUGGUCCAUCAUUAAGUUUCAUUAGCAGAGACUGUACAC-CAG--AC--ACU-CUCUUUUUCUCCA------UACCCUUUC ...........((((.((.................((((((((..(........)..))))))))(((((.(((....-...--))--).)-))))...))))))------......... ( -21.00) >DroYak_CAF1 4178 100 - 1 -CACAGUUAGCCG--------------CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU-UGUCCACCUUGU-CCAUCCUGUUCCAUCGCCAUCUCCA--- -...........(--------------(((.....((((((((..(........)..))))))))((((((.......-.)).))))....-.............))))........--- ( -22.40) >consensus _CACAGUUAGCCG______________CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU_UGUCCAC__AGU_CCAUCCUGCUCCA______UCUCCU___ ..(((((((.((................(.....)((((((((..(........)..))))))))))))))))).............................................. (-14.36 = -14.68 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:36 2006