Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,397,551 – 1,397,673 |
Length | 122 |
Max. P | 0.993790 |
Location | 1,397,551 – 1,397,655 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 68.84 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -14.58 |
Energy contribution | -15.83 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.52 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1397551 104 - 22224390 UUGCAUUUG--CCACUUGAC-GCUUUUGUGUGUAAUUGAUUUUCAACGCUU--AUUGUCAAGUGGCAAGCAGAACAGCAAGCGCAACAAAGCGGUCCCA-------ACCCAG-CCAG ((((..(((--(((((((((-(.....((((..............))))..--..)))))))))))))))))....((..((........))(((....-------)))..)-)... ( -30.74) >DroGri_CAF1 41657 89 - 1 UUGCGUUUGAAGCACUCGACGCCUUUUGUGUGUA-AUUAUU--CAACGCUUUGACUGUCAAGUGG---------UUGGAACAACAUUCAU----------------AACAACAACAA ....((((.((.((((.((((......((((...-......--..))))......)))).)))).---------)).)))).........----------------........... ( -18.20) >DroEre_CAF1 32230 92 - 1 UUGCAUUUG--CCACUUGAC-GCUUUUGUGUGUAAUUGAUUUCCAACGCUU--AUUGUCAAGUGGCAAGCAAAACAGCAAGCGCAACAAAGCGGCCC-------------------- ((((..(((--(((((((((-(.....((((..............))))..--..))))))))))))))))).........(((......)))....-------------------- ( -29.64) >DroYak_CAF1 11483 111 - 1 UUGCAUUUG--CCACUUGAC-GCUUUUGUGUGUAAUUGAUUUCCAACGCUU--AUUGUCAAGUGGCAAGCAAAACAGCAAGCGCAACAAAGCGGCCCCCCAGUUUCUGCCAU-CCAG ((((..(((--(((((((((-(.....((((..............))))..--..)))))))))))))))))..(((.((((((......))((....)).)))))))....-.... ( -33.14) >consensus UUGCAUUUG__CCACUUGAC_GCUUUUGUGUGUAAUUGAUUUCCAACGCUU__AUUGUCAAGUGGCAAGCAAAACAGCAAGCGCAACAAAGCGGCCC_________A_CCA__CCAG .(((.......(((((((((.......((((..............)))).......)))))))))...((......))....)))................................ (-14.58 = -15.83 + 1.25)
Location | 1,397,583 – 1,397,673 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -24.69 |
Energy contribution | -25.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.36 |
Structure conservation index | 0.99 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1397583 90 + 22224390 CUGUUCUGCUUGCCACUUGACAAUAAGCGUUGAAAAUCAAUUACACACAAAAGCGUCAAGUGGCAAAUGCAAAUGUUUGAAAAGCAAAGC ..(((.(((((((((((((((.......((((.....))))....(......).))))))))))((((......))))...))))).))) ( -22.40) >DroEre_CAF1 32250 90 + 1 CUGUUUUGCUUGCCACUUGACAAUAAGCGUUGGAAAUCAAUUACACACAAAAGCGUCAAGUGGCAAAUGCAAAUGUUUGAAAAGCAAAGC ..(((((((((((((((((((.....((.(((...............)))..))))))))))))((((......))))...))))))))) ( -26.06) >DroYak_CAF1 11522 90 + 1 CUGUUUUGCUUGCCACUUGACAAUAAGCGUUGGAAAUCAAUUACACACAAAAGCGUCAAGUGGCAAAUGCAAAUGUUUGAAAAGCAAAGC ..(((((((((((((((((((.....((.(((...............)))..))))))))))))((((......))))...))))))))) ( -26.06) >consensus CUGUUUUGCUUGCCACUUGACAAUAAGCGUUGGAAAUCAAUUACACACAAAAGCGUCAAGUGGCAAAUGCAAAUGUUUGAAAAGCAAAGC ..(((((((((((((((((((.....((.(((...............)))..))))))))))))((((......))))...))))))))) (-24.69 = -25.03 + 0.33)
Location | 1,397,583 – 1,397,673 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -27.69 |
Energy contribution | -27.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -3.71 |
Structure conservation index | 1.01 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1397583 90 - 22224390 GCUUUGCUUUUCAAACAUUUGCAUUUGCCACUUGACGCUUUUGUGUGUAAUUGAUUUUCAACGCUUAUUGUCAAGUGGCAAGCAGAACAG .................(((((..(((((((((((((.....((((..............))))....)))))))))))))))))).... ( -27.54) >DroEre_CAF1 32250 90 - 1 GCUUUGCUUUUCAAACAUUUGCAUUUGCCACUUGACGCUUUUGUGUGUAAUUGAUUUCCAACGCUUAUUGUCAAGUGGCAAGCAAAACAG .................(((((..(((((((((((((.....((((..............))))....)))))))))))))))))).... ( -27.44) >DroYak_CAF1 11522 90 - 1 GCUUUGCUUUUCAAACAUUUGCAUUUGCCACUUGACGCUUUUGUGUGUAAUUGAUUUCCAACGCUUAUUGUCAAGUGGCAAGCAAAACAG .................(((((..(((((((((((((.....((((..............))))....)))))))))))))))))).... ( -27.44) >consensus GCUUUGCUUUUCAAACAUUUGCAUUUGCCACUUGACGCUUUUGUGUGUAAUUGAUUUCCAACGCUUAUUGUCAAGUGGCAAGCAAAACAG .................(((((..(((((((((((((.....((((..............))))....)))))))))))))))))).... (-27.69 = -27.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:33 2006