Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,365,894 – 12,365,991 |
Length | 97 |
Max. P | 0.586748 |
Location | 12,365,894 – 12,365,991 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 84.19 |
Mean single sequence MFE | -31.57 |
Consensus MFE | -21.47 |
Energy contribution | -22.80 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.68 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12365894 97 - 22224390 ----------CCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUGUGGGUGGGUGUGGGUGGGUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU ----------((((..(((....(((.((((((...))).)))...)))....)))..))...))(..((.((((((..(((.....)))..))))))))..).... ( -31.40) >DroSec_CAF1 9291 96 - 1 CCCAAACAUCCCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUG--GCUGGU---------UUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU .(((..((((((((..(......(((......))).....)..))).)))))--..))).---------..((((((..(((.....)))..))))))......... ( -31.70) >DroSim_CAF1 2387 96 - 1 CCCAAACAUCCCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUG--GAUGGU---------UUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU .(((..((((((((..(......(((......))).....)..))).)))))--..))).---------..((((((..(((.....)))..))))))......... ( -31.60) >consensus CCCAAACAUCCCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUG__GAUGGU_________UUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU ......((((((((..(......(((......))).....)..))).)))))...................((((((..(((.....)))..))))))......... (-21.47 = -22.80 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:32 2006