Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,330,516 – 12,330,615 |
Length | 99 |
Max. P | 0.715416 |
Location | 12,330,516 – 12,330,615 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.10 |
Mean single sequence MFE | -13.61 |
Consensus MFE | -9.68 |
Energy contribution | -9.43 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.33 |
Mean z-score | -1.78 |
Structure conservation index | 0.71 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12330516 99 - 22224390 ACCAUAAACAAA-ACAUAACAAAAUGGAAAACAAACAAAGAAGGCCAGUCAUUUACAUUCUUUGAGGUUUGAAUAAAGAAACUAAAAAUUUACUGGGCAA .((((.......-..........))))...............(.(((((..((((..(((((((.........)))))))..)))).....))))).).. ( -11.73) >DroSec_CAF1 7666 93 - 1 AC-AUAAACA------AAACAAAAUGGAAAACAAACAAGGAAGGCCAGUAGUUUACAAUUUUUGAGGUUUGAACAAAGAAACUAAAAAUUUACUGGGCAA ..-.......------..........................(.((((((......(((((((..(((((........)))))))))))))))))).).. ( -12.60) >DroSim_CAF1 8188 99 - 1 ACCAUAAACAAA-ACAAAACAAAAUGGAAAACAAACAAAGAAGGCCAGUAGUUUACAAUCUUUGAGGUUUAAACAAAGAAACUAAAAAUUUACUGGGCAA .((((.......-..........))))...............(.(((((((((((...((((((.........))))))...))))...))))))).).. ( -15.73) >DroYak_CAF1 8905 100 - 1 ACCAUAAACAAAAACAUAACAAAAUGGAAAACAAACAAGGAAGGCCACUAGUUUACAAUCUUUGAGGCUUAAAAAACGAAACUAAAAGUCGAGUGGCUGG .((((..................))))...............((((((((((((.((.....))))))).......(((.........)))))))))).. ( -14.37) >consensus ACCAUAAACAAA_ACAAAACAAAAUGGAAAACAAACAAAGAAGGCCAGUAGUUUACAAUCUUUGAGGUUUAAACAAAGAAACUAAAAAUUUACUGGGCAA ..........................................(.(((((((((((...((((((.........))))))...))))...))))))).).. ( -9.68 = -9.43 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:21 2006