Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,306,929 – 12,307,028 |
Length | 99 |
Max. P | 0.997591 |
Location | 12,306,929 – 12,307,028 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 93.76 |
Mean single sequence MFE | -19.83 |
Consensus MFE | -16.78 |
Energy contribution | -17.18 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -2.07 |
Structure conservation index | 0.85 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12306929 99 + 22224390 CGUCGCAGUCUUCAAACAGUGUUGCCAUCCAUUCGAUGCAAAAA-AAAAAUAGGCUAAAAUGUAGCCAAAUGUCUCAUGACAACAUAAACAUAUGUUUCA .............((((((((((((.(((.....))))).....-.......(((((.....)))))...((((....)))).....))))).))))).. ( -17.50) >DroSec_CAF1 9114 100 + 1 CGUCGCAGUCGUCAAACAGUGCUGCCAUCCAUUCGAUGCAAAAAAAAAAAUAGGCUAAAAUAUAGCCAAAUGUCUCAUGACAACAUAAACAUAUGUUUUA .(((((((((........).)))))((((.....))))..............(((((.....)))))...........)))((((((....))))))... ( -19.30) >DroSim_CAF1 9677 99 + 1 CGUCGCAGUCGUCAAACAGUGUUGCCAUCCAUUCGAUGCAAAAA-AAAAAUAGGCUAAAAUAUAGCCAAAUGUUUUAUGACAACAUAAACAUAUGUUUCA .......(((((.(((((...((((.(((.....)))))))...-.......(((((.....)))))...))))).)))))((((((....))))))... ( -22.60) >DroEre_CAF1 9199 98 + 1 CGUCGCAGUCGCCAAAUAGUGUUGCCAUCCAUUCGAUGCAAAAA--AAAAUGGGCUAAAAUAUAGCCAAAUGUCUCGUGACAACAUAAACAUAUGCUUCA ....((((.(((......))))))).........((.(((....--...((((((((.....)))))...((((....)))).))).......))).)). ( -20.54) >DroYak_CAF1 8591 98 + 1 CGUCGCAGUCGCCAAACAGUGUUGCCAUCCAUUCGAUGCAAAAA--AAAAUAGGCUAAAUUGUAGCCAAAUGUCUCAUGACAACAUAAACAUAUGUUUCA .(((((((.(((......)))))))((((.....))))......--......(((((.....)))))...........)))((((((....))))))... ( -19.20) >consensus CGUCGCAGUCGUCAAACAGUGUUGCCAUCCAUUCGAUGCAAAAA_AAAAAUAGGCUAAAAUAUAGCCAAAUGUCUCAUGACAACAUAAACAUAUGUUUCA .......(((((.(.(((...((((.(((.....)))))))...........(((((.....)))))...))).).)))))((((((....))))))... (-16.78 = -17.18 + 0.40)
Location | 12,306,929 – 12,307,028 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 93.76 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -24.96 |
Energy contribution | -24.40 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.66 |
Structure conservation index | 1.02 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12306929 99 - 22224390 UGAAACAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUACAUUUUAGCCUAUUUUU-UUUUUGCAUCGAAUGGAUGGCAACACUGUUUGAAGACUGCGACG ...((((((....))))))(((...........(((((.....))))).......-.....(((((((((((.((....))))))))))....)))))). ( -24.80) >DroSec_CAF1 9114 100 - 1 UAAAACAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUAUAUUUUAGCCUAUUUUUUUUUUUGCAUCGAAUGGAUGGCAGCACUGUUUGACGACUGCGACG ..........(((...(((((((...((((...(((((.....)))))...........(((((((.....))).))))...)))))))))))...))). ( -22.70) >DroSim_CAF1 9677 99 - 1 UGAAACAUAUGUUUAUGUUGUCAUAAAACAUUUGGCUAUAUUUUAGCCUAUUUUU-UUUUUGCAUCGAAUGGAUGGCAACACUGUUUGACGACUGCGACG ...((((((....))))))(((...........(((((.....))))).......-.....(((((((((((.((....))))))))))....)))))). ( -25.70) >DroEre_CAF1 9199 98 - 1 UGAAGCAUAUGUUUAUGUUGUCACGAGACAUUUGGCUAUAUUUUAGCCCAUUUU--UUUUUGCAUCGAAUGGAUGGCAACACUAUUUGGCGACUGCGACG ...((((((....))))))(((...........(((((.....)))))......--.....(((((((((((.((....))))))))))....)))))). ( -25.40) >DroYak_CAF1 8591 98 - 1 UGAAACAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUACAAUUUAGCCUAUUUU--UUUUUGCAUCGAAUGGAUGGCAACACUGUUUGGCGACUGCGACG ...((((((....))))))(((...........(((((.....)))))......--.....(((((((((((.((....))))))))))....)))))). ( -23.90) >consensus UGAAACAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUAUAUUUUAGCCUAUUUUU_UUUUUGCAUCGAAUGGAUGGCAACACUGUUUGACGACUGCGACG ...((((((....))))))(((...........(((((.....))))).............(((((((((((.((....))))))))))....)))))). (-24.96 = -24.40 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:06 2006