Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,264,815 – 12,264,909 |
Length | 94 |
Max. P | 0.949841 |
Location | 12,264,815 – 12,264,909 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -36.16 |
Consensus MFE | -29.88 |
Energy contribution | -29.50 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.83 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12264815 94 - 22224390 ACCCCUG--UUUAACCCCUGCAACACUGCGGACACCAUCGGAUAUUGCCGGA---------CAAUCCGGACGGAAGCCCAUCCGCCGGACUGUCGGCGGGACAUC .((((((--........(((((....))))).......))).....((((.(---------((.(((((.((((......))))))))).))))))))))..... ( -36.76) >DroSec_CAF1 11298 94 - 1 ACCCCUG--UUUAACCCCUGCAACUCUGUGGACACCAUCGGAUAUUGCCGGA---------CAAUCUGGACGGAAGCCCAUCCGCCGGACUGUCGGCGGGACAUC .......--......(((......(((((((...))).))))....((((.(---------((.(((((.((((......))))))))).))))))))))..... ( -32.90) >DroEre_CAF1 9459 94 - 1 ACCCCUG--UUUAACCCCUGCAACUAGGCGGACACCAUCGGAUAUUGCCGGA---------CAAUCCGGACGGAAAACCAUCCGCCGGACUGUCGGCGGGACAUC .((((((--.....((((((....)))).)).......))).....((((.(---------((.(((((.((((......))))))))).))))))))))..... ( -36.40) >DroYak_CAF1 39 105 - 1 ACCCCUGUGUUUAACUCCUGCAACUCGGCGGACACCAUCGGAUAUUGCCGGACAAUACGGACAAUCCGGACGGAAACCCAUCCGCCGGACUGUCGGCGGGACAUC .((((((((((....(((.((((.(((..((...))..)))...)))).))).))))).((((.(((((.((((......))))))))).)))))).)))..... ( -38.60) >consensus ACCCCUG__UUUAACCCCUGCAACUCGGCGGACACCAUCGGAUAUUGCCGGA_________CAAUCCGGACGGAAACCCAUCCGCCGGACUGUCGGCGGGACAUC ..(((............((((......))))...............(((((..........((.(((((.((((......))))))))).))))))))))..... (-29.88 = -29.50 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:48 2006