Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,385,143 – 1,385,250 |
Length | 107 |
Max. P | 0.864084 |
Location | 1,385,143 – 1,385,250 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.76 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -29.90 |
Energy contribution | -30.10 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.91 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1385143 107 + 22224390 CGCUUUGAGCUUGUCGCCUGUCAGCAGUCGCCUGGCACACAAGCGUGCAGCUGCGGAAUUGCAUGCGCAGCCACAAAGCAUCUAACAUGAUUUUAAUUAUUGCACAA .((((((.((((((....(((((((....).)))))).)))))).....((((((.(......).))))))..))))))............................ ( -32.40) >DroSec_CAF1 12571 107 + 1 CGCUUUGAGCUUGUCGCCUGUCAGCAGUCGCCUGGCACACAAGCGUGCAGCUGCGGAAUUGCAUGCGCAGCCACAAAGCAUCUAACAUGAUUUUAAUUAUUGCACAA .((((((.((((((....(((((((....).)))))).)))))).....((((((.(......).))))))..))))))............................ ( -32.40) >DroSim_CAF1 12296 107 + 1 CGCUUUGAGCUUGUCGCCUGUCAGCAGUCGCCUGGCACACAAGCGUGCAGCUGCGGAAUUGCAUGCGCAGCCACAAAGCAUCUAACAUGAUUUUAAUUAUUGCACAA .((((((.((((((....(((((((....).)))))).)))))).....((((((.(......).))))))..))))))............................ ( -32.40) >DroEre_CAF1 11564 106 + 1 CGCUUUGAGCUCGUCGCCUGUCAGC-GUCGCCUGGCACACAAGCGUGCAGCUGCGGAAUUGCAUGCGCAGCCACAAAGCAUCUAACAUGAUUUUAAUUACUGCACAA .((((((.(((((.(((......))-).))...))).)).))))(((((((((((.(......).))))))........(((......))).........))))).. ( -31.40) >DroYak_CAF1 841 107 + 1 CGCUUUGAGCUUGUCGCCUGUCAGCAGUCGCCUGGCACACAAGCGUGCAACUGCGGCGUUGCAUGCGCAGCCACAAAGCAUCUAACAUGAUUUUAAUUAUUGCACAA .((((((.(((.(.(((.((.((((.(((((...((((......))))....))))))))))).)))))))..))))))............................ ( -34.90) >consensus CGCUUUGAGCUUGUCGCCUGUCAGCAGUCGCCUGGCACACAAGCGUGCAGCUGCGGAAUUGCAUGCGCAGCCACAAAGCAUCUAACAUGAUUUUAAUUAUUGCACAA .((((((.((((((....(((((((....).)))))).))))))(((((..((((....))))))))).....))))))............................ (-29.90 = -30.10 + 0.20)
Location | 1,385,143 – 1,385,250 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 97.76 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -34.54 |
Energy contribution | -34.22 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -1.30 |
Structure conservation index | 0.98 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1385143 107 - 22224390 UUGUGCAAUAAUUAAAAUCAUGUUAGAUGCUUUGUGGCUGCGCAUGCAAUUCCGCAGCUGCACGCUUGUGUGCCAGGCGACUGCUGACAGGCGACAAGCUCAAAGCG ....((..........(((......)))((((((..((((((.(......).))))))..))(((((((..((.((....))))..)))))))..)))).....)). ( -35.10) >DroSec_CAF1 12571 107 - 1 UUGUGCAAUAAUUAAAAUCAUGUUAGAUGCUUUGUGGCUGCGCAUGCAAUUCCGCAGCUGCACGCUUGUGUGCCAGGCGACUGCUGACAGGCGACAAGCUCAAAGCG ....((..........(((......)))((((((..((((((.(......).))))))..))(((((((..((.((....))))..)))))))..)))).....)). ( -35.10) >DroSim_CAF1 12296 107 - 1 UUGUGCAAUAAUUAAAAUCAUGUUAGAUGCUUUGUGGCUGCGCAUGCAAUUCCGCAGCUGCACGCUUGUGUGCCAGGCGACUGCUGACAGGCGACAAGCUCAAAGCG ....((..........(((......)))((((((..((((((.(......).))))))..))(((((((..((.((....))))..)))))))..)))).....)). ( -35.10) >DroEre_CAF1 11564 106 - 1 UUGUGCAGUAAUUAAAAUCAUGUUAGAUGCUUUGUGGCUGCGCAUGCAAUUCCGCAGCUGCACGCUUGUGUGCCAGGCGAC-GCUGACAGGCGACGAGCUCAAAGCG .((((((((.......(((......)))........))))))))(((......)))(((....((((((.((((.(((...-)))....))))))))))....))). ( -33.96) >DroYak_CAF1 841 107 - 1 UUGUGCAAUAAUUAAAAUCAUGUUAGAUGCUUUGUGGCUGCGCAUGCAACGCCGCAGUUGCACGCUUGUGUGCCAGGCGACUGCUGACAGGCGACAAGCUCAAAGCG ..(((((((.......(((......)))....(((((((((....)))..)))))))))))))((((((.((((.(((....)))....))))))))))........ ( -36.60) >consensus UUGUGCAAUAAUUAAAAUCAUGUUAGAUGCUUUGUGGCUGCGCAUGCAAUUCCGCAGCUGCACGCUUGUGUGCCAGGCGACUGCUGACAGGCGACAAGCUCAAAGCG ................(((......)))((((((..((((((..........))))))..)..((((((.((((.(((....)))....))))))))))..))))). (-34.54 = -34.22 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006