Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 217,559 – 217,652 |
Length | 93 |
Max. P | 0.693484 |
Location | 217,559 – 217,652 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 88.46 |
Mean single sequence MFE | -33.68 |
Consensus MFE | -26.96 |
Energy contribution | -26.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.26 |
Mean z-score | -2.34 |
Structure conservation index | 0.80 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 217559 93 - 22224390 CACUCCUGCAGGACCCACAGAAUUUGUAGAGACACUAAUACUGGAGACUACAUUGCCUGAAUUGGCGGGCAAAUAAGUGCGACUUGGAGGAGG ..(((((.((((.(.(((......(((((...(.(((....))).).)))))(((((((......)))))))....))).).)))).))))). ( -30.40) >DroSec_CAF1 12564 93 - 1 CACUCCUGCAGGACCCACAGAAUUUGUAGAGACACUAAUACUGGAGACUACAUUGCCUGAAUUGGCGGGCAAAUAAGUGCGACUUGGAGGAGG ..(((((.((((.(.(((......(((((...(.(((....))).).)))))(((((((......)))))))....))).).)))).))))). ( -30.40) >DroSim_CAF1 9780 93 - 1 CACUCCUGCAGGACCCACAGAAUUUGUAGAGACGCUAAUACUGGAGACUACAUUGCCUGAAUUGGCGUGCAAAUAAGUGCGACUUGGAGGAGG ..(((((.((((.(.(((...((((((....((((((((.(.((..(.....)..)).).))))))))))))))..))).).)))).))))). ( -30.10) >DroEre_CAF1 13527 93 - 1 CACUCCUGCAGGACCCACAGUAUUUGUAGAGACACUAAUGCUGGAGACCACAUUGCCUGAAUUGGCGGGCAAGUAAGUGCGACUUGGAGGGGG ..(((((.((((..(..(((((((.((......)).)))))))..).((((.(((((((......)))))))....))).).)))).))))). ( -33.00) >DroYak_CAF1 12616 93 - 1 CACUCCUGCAGGACCCACAGUAUUUGUAGAAACACUAAUACUGGACACUACGUUGCCUGAAUUGGCGGGCAAGUAAGUGCGACUUGGAGGAGG ..(((((.((((.....(((((((.((......)).)))))))(.((((((.(((((((......))))))))).)))))..)))).))))). ( -36.80) >DroAna_CAF1 15703 93 - 1 CACGCCGGCAGGACCCACCGUAUUGGUGGAAACACUUACACUGGACACCACAGGGCCGGAGCUGGCCGGCAAGUAGGUGCGGCUGGGUGGCAG (((.(((((.....(((((.....)))))...(((((((.(((.......))).(((((......)))))..)))))))..)))))))).... ( -41.40) >consensus CACUCCUGCAGGACCCACAGAAUUUGUAGAGACACUAAUACUGGAGACUACAUUGCCUGAAUUGGCGGGCAAAUAAGUGCGACUUGGAGGAGG ..(((((.((((.(.(((......(((((...((.......))....)))))(((((((......)))))))....))).).)))).))))). (-26.96 = -26.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:16 2006